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Massive parallel processing of public high-throughput sequencing data and experiment of sharing data analysis environment
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Tazro Inutano Ohta
July 22, 2014
Science
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Massive parallel processing of public high-throughput sequencing data and experiment of sharing data analysis environment
NIG/DDBJ supercomputer user meeting at National Institute of Genetics
Tazro Inutano Ohta
July 22, 2014
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Transcript
େྔ/(4σʔλͷฒྻॲཧͱڞ༻εύίϯʹ͓͚Δڥߏஙͷࠓޙʹ͍ͭͯ ใɾγεςϜݚڀػߏ ϥΠϑαΠΤϯε౷߹σʔλϕʔεηϯλʔ େా ୡ <
[email protected]
> ! prepared for ҨݚDDBJεύίϯϢʔβձ
July 22, 2014
Summary ‣ ҨݚεύίϯΛར༻͠ެ։/(4σʔλશͯʹରͯ͠ όονॲཧΛߦ͍ɼ%#ͷߏஙΛߦ͍ͬͯ·͢ ! ‣ σʔλղੳύΠϓϥΠϯͷڞ༗ɾ࠶࣮ߦΛߦ͏ͨΊͷ 7.ίϯςφΛར༻ͨ͠ڥߏஙͷௐࠪɾ։ൃΛߦ͍ͬͯ·͢
sra.dbcls.jp
‣ ެ։/(4σʔλʹରͯ͠'BTU2$Λ࣮ߦ݁͠ՌΛճऩɾूܭ ‣ %-Մೳͳσʔλશ͕ͯର ‣ ʙొ·Ͱྃ ‣ ૯σʔλ ‣
4FRVFODF3VO TJOHMFPSQBJSFE ‣ ૯σʔλαΠζ ‣ 5 Ԙجର ެ։NGSσʔλͷϦʔυΫΦϦςΟDB
‣ σʔλసૹ ‣ MGUQNHFUʹΑΔ(#ͷσʔλసૹ Y ‣ ಉ࣌ฒྻ࣮ߦ ‣ $16$16
Y طଘܭࢉػڥͱͷࠩ
‣ ιϑτΣΞͷόʔδϣϯཧͷ ‣ ڞ༻ڥͰΠϯετʔϧ͕͍͠߹͋Δ ‣ ݱঢ়౦େּݪ͞Μͷ-1.ΛΘͤͯ͘ͳͲͰճආ ‣ IUUQXXXLBTBIBSBXTMQN ‣ େྔͷσʔλʹରͯ͠ͻͱͭͻͱͭख࡞ۀʁ
՝: จʹॻ͔ΕͨύΠϓϥΠϯΛ࠶ݱ͢Δ͜ͱ͕ࠔ
‣ 7JSUVBM.BDIJOF 7. ίϯςφͰڥ͝ͱղੳύΠϓϥΠϯΛڞ༗ ‣ ΠϝʔδΛల։͙ͯ͢͠ʹղੳΛ࢝ΊΔ͜ͱ͕Ͱ͖Δ ‣ ڥߏஙͱΠϝʔδڞ༗ͷٕज़ௐࠪ։ൃΛߦ͍ͬͯ·͢ ‣ "NB[PO8FC4FSWJDFʹ͓͚Δ".*ͷڞ༗
‣ %PDLFS)VCʹ͓͚ΔίϯςφΠϝʔδͷڞ༗ ‣ ҨݚεύίϯͰ͜ΕΒͱޓੑΛ͍࣋ͨͤͨ σʔλղੳͷ࠶ݱੑΛ୲อ͢ΔͨΊͷղܾࡦ
ίʔυιϑτΣΞͱಉ͡Α͏ʹղੳڥΛެ։/ڞ༗
ίʔυιϑτΣΞͱಉ͡Α͏ʹղੳڥΛެ։/ڞ༗ $ docker run -d -p 8080:80 -t inutano/galaxy
‣ Πϝʔδڞ༗Ͱڥͷґଘ͕ͳ͘ͳΔͱબࢶ͕૿͑Δ ‣ ࣗͰߪೖͨ͠ܭࢉػ ‣ ҨݚεύίϯͳͲͷڞ༻ܭࢉػϦιʔε ‣ "NB[PO8FC4FSWJDF "84 ͳͲͷ*OGSBTUSVDUVSFBTB4FSWJDF
*BB4 ‣ ܾΊखಋೖͷίετͱϚγϯߏɼίετ ‣ "84ͷίετ͕͔ͳΓԼ͕ͬͨͨΊબࢶͱͯ͠ݱ࣮తʹ ‣ ϧʔνϯͳܭࢉҨݚεύίϯͰ ͨͩͳͷͰ ܭࢉػϓϥοτϑΥʔϜͷબ
ॳظಋೖίετ ҡ࣋ίετ ߏͷॊೈੑ ৴པੑ/Ӭଓੑ ൿಗੑ ಛ ݸผಋೖ ✕ ✕ ̋
˚ ̋ ࢿۚ͋Ε੍ͳ͠ ڞ༻ܭࢉػࢿݯ (NIGεύίϯ) ̋ ̋ ˚ ˚ ✕ DDBJͷDBͱ݁ IaaS (Ϋϥυ) ̋ ˚ ̋ ˚ ˚ ඞཁͳ࣌ʹඞཁͳ͚ͩ ίετʑԼ͕Δ ϢʔβࢹͰͷ֤ܭࢉػڥͷϝϦοτൺֱ
Summary ‣ ҨݚεύίϯΛར༻͠ެ։/(4σʔλશͯʹରͯ͠ όονॲཧΛߦ͏͜ͱͰ%#ͷߏஙΛߦ͍ͬͯ·͢ ! ‣ σʔλॲཧղੳύΠϓϥΠϯͷอଘӬଓԽ࠶࣮ߦΛߦ͏ͨΊͷ 7.ίϯςφΛར༻ͨ͠ڥߏஙͱެ։%#ͷௐࠪɾ։ൃΛߦ͍ͬͯ·͢