Fostering the next gen of open science with R

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OPEN SCIENCE foﬆering NEXT GEN . . . . . . . with . . . . . . .

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@_inundata

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MOST OF THESE DATA ARE NOT EASILY ACCESSIBLE

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The data life cycle

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IT LEADS TO THIS

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A RESEARCH PAPER THE NARRATIVE THE DATA THE CODE

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THE NARRATIVE THE DATA THE CODE A RESEARCH PAPER

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Scientists don’t share code or data few incentives

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But incentive structures are slowly changing

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Instructions for preparation of the Biographical Sketch have been revised to rename the "Publications" section to "Products" and amend terminology and instructions accordingly. This change makes clear that products may include, but are not limited to, publications, data sets, software, patents, and copyrights. Funders:

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community:

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community:

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Programmatic workﬂows increase reproducibility

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glm(y ~ -1 + a + c + z + a:z, data = mydata, maxit = 30) This is reproducible, repeatable and can serve as a analytic workﬂow

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INCORPORATE OPEN SCIENCE INTO exiﬆing workflows

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R + open science

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Why R? 5,000 + Packages Widely used by environmental scientists

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Our mission is to develop tools (mostly around R) to access scientiﬁc data repositories, full-text of articles, and science metrics.

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ACQUIRE DATA { 50+ CURRENT OFFERINGS packages ADD METADATA DEPOSIT DATA

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Search over 100K articles rplos

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Retrieve data underlying papers in 200+ journals rdryad

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Validate results from papers treebase

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Past and future climate projections rWBclimate

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Map biodiversity data spocc Danaus plexippus

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Model species distributions

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Deposit data into permanent archives library(figshare) fs_auth() id <- fs_create() fs_upload(id, r_object) rfigshare

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A RESEARCH PAPER THE NARRATIVE THE DATA THE CODE

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CODE/ DATA Acquisition Analysis Documentation Deposition

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DATA SHOULD BE machine readable

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AUTOMATE BORING TASKS paint drying adding metadata

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dryaddat <- download_url("10255/dryad.1759") ! dat <- dryad_getfile(dryaddat) ! eml_write(dat = dat, meta, title = "Landings Data", description = description, creator = "Karthik Ram ", file = "landings.xml") ! ! eml_publish("landings.xml", description = description, categories = "Ecology", tags = "fisheries", destination = "figshare", visibility = "public")

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