Standardizing
biologging data
for LifeWatch
Camera traps,
acoustic telemetry
and GPS tracking
Biodiversity Next, Leiden
Peter Desmet
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Hi!
• Open data publication
• Research software
development
• oscibio.inbo.be
Peter Desmet, Stijn Van Hoey, Lien Reyserhove,
Dimitri Brosens, Damiano Oldoni, Tanja Milotic
(2019) doi.org/10.3897/biss.3.37413
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LifeWatch Flanders
• Part of: European LifeWatch
infrastructure (ESFRI)
• Coordinated by: INBO & VLIZ
• Funded by: Research
Foundation Flanders (FWO)
• Terrestrial, freshwater, and
marine observatory
lifewatch.be
Bird tracking
• Tags: UvA-BiTS.nl
– GPS, temperature, acceleration
• Read-out: wireless and
automatic, via antenna near
colony
• Data management: UvA-BiTS
database, hosted by University
of Amsterdam
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Bird tracking
• Open data publication:
– Initially: GBIF IPT
– Now: Movebank
– Hopefully: Movebank -> GBIF
• Data standardization:
– SQL views to Movebank format
for reference, gps and
acceleration data
github.com/inbo/bird-tracking
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Fish tracking
• Operational: since 2014
• Species: 16
– European eel (401)
– Atlantic cod (151)
– Atlantic salmon (95)
– Other species (144)
• Detections: 17 million+
lifewatch.be/en/fish-acoustic-receiver-network
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Fish tracking
• Receivers: VEMCO
– 160 permanent (PBARN)
– Temporary networks for studies
• Read-out: manual
• Data management: European
Tracking Network (ETN)
database hosted by VLIZ
Reubens et al. doi.org/10.1186/s40317-019-0164-8
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Fish tracking
• Open data publication:
– GBIF IPT (data paper in
preparation)
• Data standardization:
– SQL views to Darwin Core
sampling-event format (OBIS
ENV)
github.com/inbo/etn-occurrences
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Camera traps
• Operational: since 2017
• Target species:
– Wild boar
– Many bycatch species
• Detections: 37.5k triggered
bursts
lifewatch.be/en/camera-trap-research-
infrastructure-catrein
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Camera traps
• Camera traps: Reconyx
– 45 in national park
– 15 elsewhere
• Read-out: manual
• Data management: Agouti,
hosted by University of
Wageningen
www.agouti.eu
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Camera traps
• Open data publication: 2020
– Zenodo: for CTMS and images
– GBIF IPT: for DwC occurrences,
linking to images on Zenodo
• Data standardization:
– SQL views to Camera trap
metadata standard (CTMS)
– EU ALTER-Net collaboration
Forrester et al. doi.org/10.3897/BDJ.4.e10197
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Thank you!
oscibio.inbo.be
@oscibio
Peter Desmet et al. (2019) Standardizing
biologging data for LifeWatch: Camera traps,
acoustic telemetry and GPS tracking.
Presentation. http://bit.ly/lifewatch-biologging