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Scientific names (genus, species)

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Meaningless name Scientific names (genus, species) Meaningful name Semi-meaningless name

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Meaningless name Scientific names (genus, species) Meaningful name Semi-meaningless name UNKNOWN Blank Incidental

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Meaningless name Scientific names (genus, species) Meaningful name Semi-meaningless name UNKNOWN Blank Incidental FROG OR TOAD, UNIDENTIFIED Green bird with blunt bill. Unidentified. UNKNOWN ANTSHRIKE

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Meaningless name Scientific names (genus, species) Meaningful name Outdated name Current name Semi-meaningless name UNKNOWN Blank Incidental FROG OR TOAD, UNIDENTIFIED Green bird with blunt bill. Unidentified. UNKNOWN ANTSHRIKE

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Meaningless name Scientific names (genus, species) Meaningful name Outdated name Current name Semi-meaningless name UNKNOWN Blank Incidental FROG OR TOAD, UNIDENTIFIED Green bird with blunt bill. Unidentified. UNKNOWN ANTSHRIKE Oncifelis Acanthidositta Acanthocottus

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Meaningless name Scientific names (genus, species) Meaningful name Outdated name Current name Semi-meaningless name UNKNOWN Blank Incidental FROG OR TOAD, UNIDENTIFIED Green bird with blunt bill. Unidentified. UNKNOWN ANTSHRIKE Oncifelis Acanthidositta Acanthocottus Leopardus Acanthisitta Myoxocephalus

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py)

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS NCBI Taxonomy Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS NCBI Taxonomy Fishbase Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS NCBI Taxonomy Fishbase … Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS NCBI Taxonomy Fishbase … Dropbox/GitHub

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Scientific names (genus, species) Python 3 script (bettertaxonomy.py) 1. Internal database 2. GBIF Checklists 3. TaxRefine Local CSV Mammal Species of the World ITIS NCBI Taxonomy Fishbase … Dropbox/GitHub Semi-meaningless names!

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Usage • $ python3 better_taxonomy.py input.csv -i internal.csv > output.csv

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Usage • $ python3 better_taxonomy.py input.csv -i internal.csv > output.csv • Program: https://github.com/gaurav/bettertaxonomy/tree/ develop

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Usage • $ python3 better_taxonomy.py input.csv -i internal.csv > output.csv • Program: https://github.com/gaurav/bettertaxonomy/tree/ develop • From: https://docs.google.com/spreadsheets/d/16Dpuo- NqXjpjCLVrHHyQ0uvQxNQA35oIQOewPHrLLfg/edit? usp=sharing

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Usage • $ python3 better_taxonomy.py input.csv -i internal.csv > output.csv • Program: https://github.com/gaurav/bettertaxonomy/tree/ develop • From: https://docs.google.com/spreadsheets/d/16Dpuo- NqXjpjCLVrHHyQ0uvQxNQA35oIQOewPHrLLfg/edit? usp=sharing • To: https://docs.google.com/spreadsheets/d/ 1Jpr6stWGR3qe0swQ4_215kogau2lqmWxaDivBbGVd60/ edit?usp=sharing

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Next steps 1. Speed: caching, combine queries 2. Prioritise checklists: by class, in configuration file 3. Higher taxonomy: support semi-meaningful names