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Long Amplicon Analysis Run Parameters
16
SMRT® Analysis Command Line
• All the above plus lots more!
• Extra Subread Criteria
– maxLength, minReadScore, minSnr
• Extra Clustering Criteria
– maxClusters, clusterInflation (Markov)
• Extra Phasing Criteria
– minSplitScore, minSplitFraction, minSplitReads
• Extra Filtering Options
– minPredictedAccuracy, noChimeraFilter, chimeraScoreThreshold,
convergenceFilter
• Process Control
– numThreads & forced threading across barcodes*
*May cause out of memory error, only recommended for high memory machines