ROSIE An Automated Image Processing Infrastructure Scott Burns Education and Brain Science Research Lab [email protected] Intro Why What Input Import Processing Web End 

Common Problems Raw Data > RA RA RA Acquisition Analysis Intro Why What Input Import Processing Web End 

Intro Why What Input Import Processing Web End 

REDCap Intro Why What Input Import Processing Web End 

Session Number Normal Session? Run # : Image Type Intro Why What Input Import Processing Web End 

Import Intro Why What Input Import Processing Web End 

Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What Input Import Processing Web End 

ACCRE Processing Intro Why What Input Import Processing Web End 

fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP 

Structural T1: Freesurfer • Relatively simple (recon-all -s ...) • Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation 

Web Architecture Intro Why What Input Import Processing Web End 

Web App: Projects Intro Why What Input Import Processing Web End 

Web App: Subjects Intro Why What Input Import Processing Web End 

Web App: Logs Intro Why What Input Import Processing Web End 

Web App: Job Results Intro Why What Input Import Processing Web End 

Upcoming Features • Mining processed results for REDCap import • Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End 

Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End 

Questions Intro Why What Input Import Processing Web End