FGSCdb Tracking the global spread of species and chemotypes EM Del Ponte, GM Moreira, CP Nicolli, TJ Ward, C Waalwijk, T van der Lee, Kerry O'Donnell, SN Chulze, SA Steinglein, D Pan, S Vero, Hao Zhang, DJ Tessmann, LJ Vaillancourt, A. Moretti, A. Logrieco Coordination Collaborators

Major disease of wheat and barley

Source: Trail (2009) But also for other crops..

The rise of a species complex Phylogenetic species recognition based on genealogical concordance

FGSC species and trichothecene profile

2012: Review on the complex

First review: FGSC species distribution No quantitative data on species frequency Authors' collection

First quantitative data from literature on FGSC distribution

Fusarium graminearum

Fusarium asiaticum

Thorough, but only narrative review - no quantitative data

First online database Limited to European continent

Maps and plots only in the article

Searchable and results in tabular format - no graphs and maps

How to make it? … not alone. Need a great postdoc! Strain info Article info article_ID, pub_order, citation, DOI, title, author 1 to 14, journal_name, vol, num, pages, year, category_jcr, IF, n_citations, country_1 to 6, n_isolates, Fasi, Fboo, Fcor, Fgra, Fmer, Fnep, Fvor, Fasi_DON, Fasi_3ADON, Fasi_15ADON, Fasi_NIV, Fboo_DON, Fboo_15ADON, Fcor_15ADON, Fcor_NIV, Fgra_DON, Fgra_3ADON, Fgra_15ADON, Fgra_FUSX, Fgra_NIV, Fmer_DON, Fmer_15ADON, Fmer_NIV, Fnep_DON, Fvor_DON, Fvor_NIV, Fvor_4ANIV, country_1a to 3a, host_1 to 4. ID, Host,Organ, Cultivar, Location name, Country, Year, Latitude, Longitude, FGSC Species, ID method, Strain code, Collection code, Tri_genotype, Genotyping method, Chemotype, Chemotyping method,chemotyping substrate, Pub1, Pub2,Pub3,Comments Raw data from collaborators Screening and extracting data from articles' tables and supplementals -> FGSC species ID Dr. Glaucia Moreira

Article info datatable

Strain info datatable

HTML report high quality plots Interactive dashboard: maps, plots & tables Data tables Computational work

RESULTS as of Feb 2020

Summary of article data: strain info and articles per year peer-reviewed articles 2000 to 2020 52 articles raw data on strain info 33 strain info extracted from articles 20 no strain info 105

Where are they published and impact? PNAS New Phytologist 35 mean = 2.71 median = 2.94

Number of articles per author 555 unique authors Authorship analysis: WordCloud Authors per article median = 7 (3 to 9)

Authorship analysis: Country of authors 33 countries

Authorship analysis: Country of authors 33 countries

Authorship collaboration networks Individual article no shared authorship Big nodes: several connections Center of large community Small isolated community

Country collaboration networks

Strain summary info - as of Feb. 2020 105 articles 8,843 11,062 3,760 23,665 14,822 not geotagged raw data from authors With known location available in the paper Reported location Included in the strain DB and map

Global coverage of sampling 105 articles 23,665 strains

FGSC species prevalence 23,665 strains

Strains by host – major crops

Strains by Chemotype – 3 major types

Correspondence analysis: host, specis and chemotype Small grains Maize Rice

Open Fusarium strain database Interactive dashboard: maps, graphs and tables https://emdelponte.github.io/FGSC/

Open Fusarium strain database Search any field Download results as XLS or PDF file

Ongoing and future > Submit the manuscript > Encourage authors to deposit raw data > Include links to FusariumID, Fusarium MLST, etc