Slide 35
Slide 35 text
Overview Introduction Methods Applications
K-MERS FROM REDUCED AMINO ACID ALPHABETS RETAIN
EVOLUTIONARILY CONSERVED BIOCHEMICAL PROPERTIES
8
Amino acid
C
A, G, P, S, T
D, E, N, Q
H, K, R
I, L, M, V
F, W, Y
Property
Sulfur
polymerization
Small
Acid and amide
Basic
Hydrophobic
Aromatic
Dayhoff
a
b
c
d
e
f
Dayhoff MO (1965). An Atlas of Protein Sequence.
Phillips R, Kondev J, & Theriot J. (2012) Physical Biology of the Cell
Peris, P., López, D., & Campos, M. (2008). IgTM: An algorithm to predict transmembrane domains and topology in proteins. BMC Bioinformatics, 9(1), 1029–11. http://doi.org/10.1186/1471-2105-9-367