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Efforts  in  the  seman.c  standardiza.on   of  orthology  content     Jesualdo   T.   Fernández-­‐Breis,   Mari   Carmen   Legaz-­‐García   (Universidad  de  Murcia,  IMIB-­‐Arrixaca,  Spain)        Hirokazu  Chiba,  Ikuo  Uchiyama   (NaLonal  InsLtute  for  Basic  Biology,  Japan)       Biohackathon    2015  Symposium,  Nagasaki,  September  13th  

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Phylogenetic concepts

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The QfO 2013 meeting report

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Working group activities Analysis  of   ontologies   Orthology   Ontology  (OO)   Mappings  from   in-­‐use  formats   to  OO   GeneraLon  of   RDF  datasets   SemanLc  Web   for  data  query   and  inferencing  

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Achievements…so far   •  DraY  of  the  Orthology  Ontology   •  Standard  transformaLon  process  for  geZng  RDF/OWL  data   from  OrthoXML  databases   •  State  of  the  art  tooling   •  Engagement  of  the  Quest  for  Orthologs  community    

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Goals for this Biohackathon •  Orthology  Ontology   –  DocumentaLon   –  Policy  for  idenLfiers   –  Revision  and  enhancement   •  Datasets   –  Scaling  up  tesLng   –  Single  repository  vs  Distributed  repositories   –  Interoperability  with  Uniprot   –  Quality  of  datasets    

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  Thank  you  for  your  abenLon   QuesLons,  comments..   Jesualdo  Tomás  Fernández  Breis   Universidad  de  Murcia,  IMIB-­‐Arrixaca   [email protected]   hbp://webs.um.es/jfernand