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2016-04-21 THAPBI PHYTO-THREATS PUBLICLY-AVAILABLE PHYTOPHTHORA GENOME DATA

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SOURCES

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Taxonomy ID: 4783 66 Assemblies, 20 species 2 new assemblies since last meeting 118 BioProjects (each with >= 1 assembly) NCBI/RefSeq

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10 Genome Portals (various versions) 4 projects: P. capsici, P. cinnamomi, P. ramorum, P. sojae (and an endornavirus…) Data also at NCBI JGI

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Short read archive 68 assembly datasets (some duplication/versioning) ENA

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(release 31 current) 14 genomes (duplication of NCBI) 1xP. infestans, 1xP. kernoviae, 1xP. lateralis, 9xP. parasitica, 1xP. ramorum, 1xP. sojae Ensembl Compara All-vs-all synteny comparisons not available (also ) Ensembl Protists downloadable downloadable PhytoPath

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STATS

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Assemblies variable 82 contigs - 250k contigs (median 4500) 36Mbp - 230Mbp total length (median 48Mbp)

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ANIM

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