Standardize experimental protocol description for reproducible science

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Standardize experimental protocol description for reproducible science Tazro Ohta @inutano Database Center for Life Science BioHackathon 2017 Symposium

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Reproducibility: still problem from the slides of ISMB/ECCB 2013 Keynote by Prof. Carole Goble

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More reproduciblity = less humanity

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Experimental protocols for automation should be in a machine readable format without ambiguity executable by both machines and humans

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What we did #biohack14, #biohack15, #BLAH15, #biohack16, #BLAH16 Jean‑Luc, Alex, Olga, Erick, and me discussion and development of linked data model Protocols as Document Executable workflow Populating examples and use cases Collaboration with RBI, a company developing biological experiment automation robot Publication: Robotic crowd biology with Maholo LabDroids doi:10.1038/nbt.3758

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What we will do #biohack17 Brush up the model through populating examples Tranalation from existing protocols to linked data Human readable && Machine readable Write markdown, convert to linked data https://github.com/inutano/experimental‑protocols Biological sample to article figure in one click connect biological experiment to data analysis pipeline Common Workflow Language

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Team Pitagora‑Galaxy Reproducibility on data analysis "environment" SIG www.pitagora‑ galaxy.org Haruo Hiromu Manabu Masaaki Norio Ryota Tazro Yuh