GitHubで行うreproducible research (GitHub Kaigi, Tokyo, 2014)

by Uryu Shinya

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GitHubͰߦ͏ reproducible research ӝੜਅ໵ ԣ඿ࠃཱେֶେֶӃ ؀ڥ৘ใֶ෎ GitHub Kaigi(@Shibuya), June 1, 2014 github.com/uribo

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Reproducible Research (RR) ࠶ݱՄೳͳݚڀ ࿦จʹॻ͔Ε͍ͯΔํ๏ɺ৚݅Ͱߦ͑͹ɺ ಉ༷ͷ݁Ռ͕ಘΒΕΔ objectivity ٬؍ੑ clearly ໌ྎੑ properly ଥ౰ੑ

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։ൃऀͱՊֶऀͰڞ௨͢Δ΋ͷ Prli´ c, A., and J. B. Procter. 2012. PLOS Computational Biology 8 1. Don’t Reinvent the Wheel 2. Code Well 3. Be Your Own User 4. Be Transparent 5. Be Simple 6. Don’t Be a Perfectionist 7. Nurture and Grow Your Community 8. Promote Your Project 9. Find Sponsors 10. Science Counts

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ݚڀͷྲྀΕ ౷ܭղੳͱ࿦จͷࣥච͸َ໳

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GitHubͷಛ௃Λ׆͔ͨ͠RRͳݚڀ ιʔγϟϧίʔσΟϯάͷ֓೦Λݚڀʹ... ▶ ςΩετϑΝΠϧΛ΋ͱʹͨ͠ਐߦ ▶ ਐ௙ঢ়گʹԠͨ͡ϒϥϯνͷ੾Γସ͑ ▶ ༻్Λهड़ͨ͠ίϛοτίϝϯτ ▶ όοΫΞοϓɺࠩ෼֬ೝ͸ؾʹ͠ͳ͍

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σʔλղੳ: ϦϙδτϦ಺ͷιʔείʔυɺσʔλϑΝΠϧΛ ༻͍Ε͹ಉ༷ͷ݁Ռ͕ಘΔ͜ͱ͕Ͱ͖Δ

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࿦จࣥච: ςΩετϑΝΠϧͳͷͰࠩ෼ͷ֬ೝ͕༰қɻ ඞཁ͕͋Ε͹όοΫΞοϓ͔Β෮ݩ

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Pull Request, IssuesΛ࢖ͬͨࠪಡ

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·ͱΊ ▶ Computational Science ͚ͩͰͳ͘ɺ͍͔ͳΔ ෼໺ͷݚڀʹ΋ reproducible research ͷ֓೦͕ ඞཁ ▶ Data analysis ͱ Writing ʹ GitHub ͕׆༻Ͱ ͖Δ ▶ ιʔγϟϧίʔσΟϯάͷ֓೦͸ݚڀͷ࠶ݱ ੑ͚ͩͰͳ͘ɺ٬؍ੑ΍໌ྎੑΛ޲্ͤ͞Δ