Ecologist must use git - Speaker Deck

Ecologist must use git

by Uryu Shinya

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ੜଶֶऀ͕  Λ ࢖͏΂͖ཧ༝ ӝੜਅ໵  ԣ඿ࠃཱେֶେֶӃɹ؀ڥ৘ใֶ෎ɹञҪݚڀࣨ January 24, 2015 ೔ຊੜଶֶձؔ౦஍۠ձެ։γϯϙδ΢Ϝ

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\ ݚڀͷ࿩͸ͳ͠/ ࠙਌ձͷͱ͖ʹ

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LT ͷ಺༰ ݚڀͷ࠶ݱੑʹ ؔ͢Δ࿩

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 ࠶ݱੑ  ੲ͔ΒՊֶʹ͖ͭ·ͱ͏໰୊  ࿦จͷ಺༰Λୈࡾऀ͕࠶ݱͰ͖Δ͔  ࠶ݱੑͷߴ͍ݚڀ ≒ ྑ͍ݚڀ

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ͱ͜Ζ͕...

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 ݚڀதʹؕΔҋ ࿦จݪߘͷϑΝΠϧ໊Λ վగͷ౓ʹมߋ͢Δ manuscript_v0.1.tex manuscript_v1.0.tex manuscript_v2.2.tex manuscript_submit.tex ֤छࠞཚͷݩ...

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 ݚڀதʹؕΔҋ ࣗ෼Ͱॻ͍ͨ ղੳ༻ͷίʔυͷҙຯ͕ Θ͔Βͳ͍ ੲ͸Ͱ͖ͨͷʹ...

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ҋ͸ਂ͍  Ϟσϧ͝ͱʹϑΝΠϧΛ༻ҙ… ૿৩ͨ͠ϑΝΠϧ͕ࢄཚ  ҙຯෆ໌ͳϑΝΠϧ໊ʢex. ͋.R, temp.txtʣ  ࠶ݱੑͷ௿͍ΤΫηϧͰͷ࡞ۀ  ࡟আͯ͠ྑ͍͔Θ͔Βͳ͍ϑΝΠϧ

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

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Ұےͷޫ໌

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͗ͬͱ 

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ͱ͸ͳʹ͔  ෼ࢄܕόʔδϣϯ؅ཧγεςϜ  ίϯϐϡʔλͷιʔείʔυ։ൃɾ ؅ཧͷͨΊʹ࡞ΒΕͨ  ϦϙδτϦʹΑΔϩʔΧϧ؀ڥͰͷ ϑΝΠϧ؅ཧ  ෳ਺ਓͰͷ࡞ۀʹ΋ޮՌత

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࡞ۀ಺༰ͷཤྺ

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ࠩ෼දࣔ

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ࠩ෼දࣔʢը૾ϑΝΠϧʣ https://github.com/cameronmcefee/Image-Diff-View-Modes/

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ͲΜͳʹ͔͢ΕͨΠϯΫͰ΋ɺ ࠷ߴͷهԱྗʹউΔ ௕͍࣌ؒΛ͔͚ͯݚڀ͸׬੒͢Δ  ͍ͭɺ୭͕ɺͳʹΛͨ͠ͷ͔Λه࿥͠ ͓ͯ͘͜ͱ͕େࣄ

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GitHub 

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GitHub ͱ͸ͳʹ͔  ϦϙδτϦͷϗεςΟϯάαΠτ  ެ։͞ΕͨϦϙδτϦͷ։ൃʹࢀՃ Ͱ͖Δ  ֶੜɺݚڀ૊৫Ͱ͋Ε͹ແྉͰඇެ ։ϦϙδτϦΛ࡞੒Մೳ

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GitHub ׆༻ࣄྫ: R ύοέʔδ ։ൃɺ഑෍͸ CRAN GitHub ͕ओྲྀʹ ྫ) taxize ύοέʔδ (https://github.com/ropensci/taxize) devtools::install_github("taxize", "ropensci")

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GitHub ׆༻ࣄྫ: BADD https://github.com/dfalster/baad  a Biomass And Allometry Database for woody plants  σʔλ͓Αͼ࢖༻ͨ͠ R ίʔυΛެ։  Ecology ʹ౤ߘதͱͷ͜ͱ

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GitHub ׆༻ࣄྫ: ୈ 35 ճؔ౦஍۠ੜଶֶؔ܎म࢜࿦จൃදձ https://github.com/esj-kantomaster/esj-kantomaster.github.io

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Reproducible Research ʹର͢Δػӡ Ram, K. (2013). Git can facilitate greater reproducibility and increased transparency in science. Source Code for Biology and Medicine Peng, R. D. (2011). Science Loman, N., & Watson, M. (2013). Nature Biotechnology http://www.nature.com/news/toolbox

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Try   ࣗ෼ͷͨΊɺ  ஥ؒͷͨΊɺ  ୭͔ͷͨΊ