Slide 15
Slide 15 text
[[annotation]]
file=“ExAC.v3.vcf”
fields=[“AF”, “AC_Het”]
names=[“exac_aaf”, “exac_num_het”]
ops=[“first”, “first”]
[[annotation]]
file="dbsnp.b141.vcf.gz"
fields=["ID"]
names=["rs_ids"]
ops=[“concat"]
[[annotation]]
file="gerp.elements.bed.gz"
columns=[4,4]
names=[“gerp_mean”,”gerp_var”]
ops=[“mean”, "lua:variance(vals)"]
vcfanno configuration file.
Allows multiple annotations
from each file
Can rename the annotations
in the resulting VCF
Multiple operations to
summarize the results
of multiple hits in annot. file:
mean, max, min
concat, count, uniq
first, flag
Match on POS+REF+ALT
for VCF annotations.
Lua for
custom computations.
variance() defined in
custom.js