大量塩基配列登録申請システムができるまで

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1. େྔԘج഑ྻొ࿥ਃ੥γεςϜ͕
   Ͱ͖Δ·Ͱ ,FJUB
   6SBTIJNB
   !VSTN
   0DU
   
   
   
   ,BJHJ
   PO
   3BJMT
   
2. w ࠃཱҨ఻ֶݚڀॴ
   ੜ໋৘ใɾ%%#+ηϯλʔ͕
   w Ԙج഑ྻʢੜ෺ͷҨ఻৘ใʣΛσʔλϕʔεԽͯ͠ެ։͢ΔͨΊʹ
   w όΠΦݚڀऀ͔ΒԘج഑ྻͷొ࿥ਃ੥Λड͚෇͚Δࡍʹ࢖ΘΕΔγε ςϜ
   w (PPHMFϑΥʔϜʹϑΝΠϧΞοϓϩʔυػೳ͕෇͍ͨΑ͏ͳΠϝʔδ
   w ͨͩ͠ѻ͏ϑΝΠϧ͕େ͖͍ ຊ೔ͷ͓୊
   େྔԘج഑ྻొ࿥ਃ੥γεςϜ
3. ݱঢ়ͱΰʔϧ Ԙج഑ྻͷొ࿥ਃ੥Λड͚෇͚Δͱ͖ɺݱঢ়Ͱ͸
   w (PPHMFϑΥʔϜͰҰใΛೖΕͯ΋Β͏
   w ϝʔϧͰ΍ΓऔΓΛͯ͠ඞཁͳ৘ใΛώΞϦϯά͢Δ
   w TDQͰϑΝΠϧΛసૹͯ͠΋Β͏
   ͷΑ͏ͳखॱͰߦΘΕ͍ͯͯɺͱͯ΋खֻ͕͔ؒΔͷͰվળ͍ͨ͠
4. μΠϨΫτΞοϓϩʔυ
   "DUJWF
   4UPSBHF w ϒϥ΢β͔Β௚઀ετϨʔδαʔϏεʹϑΝΠϧΛΞοϓϩʔυͤ͞Δ
   w ΞϓϦέʔγϣϯʹ͸࣮ϑΝΠϧͷ୅ΘΓʹϑΝΠϧΛࣝผ͢ΔΩʔ͕౉ͬͯ ͘Δ
   w ඞཁͰ͋Ε͹͜ͷΩʔΛ࢖ͬͯݩͷϑΝΠϧΛऔಘͰ͖Δ
   w ΞοϓϩʔυͷϋϯυϦϯάΛετϨʔδαʔϏεʹؙ౤͛Ͱ͖Δ
5. Ξοϓϩʔυ͚ͩͰ͸ͳ͔ͬͨ w Ξοϓϩʔυ͞ΕͨϑΝΠϧͷத਎ΛಡΈग़ͯ͠ϑΥʔϜͷ߲໨ΛҰ෦ࣗಈͰ ຒΊ͍ͨ
   w ϑΝΠϧ͕େ͖͍ͱۃΊͯ೉͍͠
7. 4USFBNT
   "1* w ϒϥ΢β্ͰσʔλΛࡉ੾ΕʹಡΈॻ͖͢ΔΠϯλʔϑΣʔεΛఏڙ͢Δ
   w ର৅͸ϑΝΠϧ΍ωοτϫʔΫϦΫΤετϨεϙϯεͳͲ
   w ϝϞϦരൃͷ৺഑ͳ͘େ͖ͳσʔλΛѻ͑Δ const res = await fetch('https://example.com'); res.body // これが ReadableStream
8. <input type="file" /> <script> document.querySelector('input') .addEventListener('change', async (e) => { const file = e.target.files[0]; const reader = file.stream().getReader(); for (;;) { const {done, value} = await reader.read(); if (done) { break; } console.log(value); } }); </script>
10. >NIES3753_TRINITY_DN0_c0_g1_i1_len285 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTCATCAAACTCCTGCGCTGCCACT GCAGCCAAACACACAGCTGACACAGCACCAAAATAACCCCACGCCCTGCAGCTACAG // >NIES3753_TRINITY_DN1_c3_g1_i1_len267 CCTCAACGGGAGCAGCTGATCAAACTACAGAACTCCACACGCCCCATGGCACCACTT GTGACGGGACGGGCCTGGAGGTGGATTCATATCAGCCCCACCACTCCAAGCATGCTG // >NIES3753_TRINITY_DN1_c4_g1_i1_len257 GTCCATACTGGTCCTAGCAGGTCCCAGAATCTACCTCTTGCTTGCACCATATGCACT TTCTGCATGCCTGGCCACAGTCTGGCTTGAGCCATTGGATGTGCCAGTTAACAGTAT // >NIES3753_TRINITY_DN1_c2_g1_i1_len229 CCCCCCCCCCCCCCCCCCCTCTCCTGCTGCATCTGTGGGGACATGCCCATCTGAGAG GCAGCCCAGCACTCATTGCAGATCGCAAGACCACTCGCCTCAACTCCCTTCACCCCA //
11. const LF = '\n'.codePointAt(0); const CR = '\r'.codePointAt(0); const GT = '>'.codePointAt(0); async function parse(file) { const reader = file.stream().getReader(); let done, value; let entriesCount = 0; let isBOL = true; while (({done, value} = await reader.read()), !done) { for (const byte of value) { if (isBOL && byte === GT) { entriesCount++; isBOL = false; } else { isBOL = byte === LF || byte === CR; } } } return {entriesCount}; }
12. ύʔεதʹϒϥ΢β͕ݻ·Δ໰୊ w େ͖ͳϑΝΠϧΛύʔε͢Δͱλϒͷඳը͕ࢭ·ͬͯૢ࡞ʹ΋൓Ԡ͠ͳ͍ঢ়ଶ ʹͳͬͯ͠·͏
    w ύʔε͕ऴΘΔͱݩʹ໭Δ
    w +BWB4DSJQU
    ͸γϯάϧεϨουͳͷͰ$16཯଎ͳίʔυ͸ଞͷ͢΂ͯΛࢭΊ ͯ͠·͏Մೳੑ͕͋Δ
    w Ұൠతʹ͸
    TFU5JNFPVU
    ͳͲͰଞͷॲཧׂ͕ΓࠐΉ༨஍Λ࡞ͬͯରԠ͢Δ
13. 8FC
    8PSLFST w ϝΠϯεϨουͱ׬શʹಠཱͨ͠ผεϨουͰॲཧΛ࣮ߦ͢Δ࢓૊Έ
    w ϫʔΧ͸ϝΠϯεϨουͷඳը΍ૢ࡞Λ๦͛ͳ͍
    w ϫʔΧ͸ฒྻʹಈ࡞͢ΔͨΊϚϧνίΞΛ׆༻Ͱ͖Δ
14. const worker = new Worker('./worker.js'); worker.addEventListener('message', e => { console.log(e.data); }); worker.postMessage('hello, world'); addEventListener('message', e => { postMessage(e.data.toUpperCase()); }); NBJOKT XPSLFSKT ᶃ ᶄ ᶅ ᶆ
15. addEventListener('message', async ({data: {file}}) => { try { const payload = await parse(file); postMessage([null, payload]); } catch (err) { postMessage([err, null]); } }); async function parse(file) { const reader = file.stream().getReader(); // ... return {entriesCount}; }
16. ϋογϡ஋ͷܭࢉ͕஗͍໰୊ w "DUJWF
    4UPSBHF͸μΠϨΫτΞοϓϩʔυͷͱ͖ϑΝΠϧͱҰॹʹϋογϡ ஋ΛૹΔ
    w େ͖ͳϑΝΠϧͩͱϋογϡ஋ͷܭࢉʹֻ͕͔࣌ؒΔ
    w "DUJWF
    4UPSBHF͸TQBSLNEͱ͍͏ϥΠϒϥϦΛ࢖ͬͯϋογϡ஋ΛٻΊ ͍ͯΔ
    w TQBSLNE͸ಉछͷϥΠϒϥϦͷதͰ͸τοϓϨϕϧʹ଎͍
17. 8FC"TTFNCMZ w ओʹϒϥ΢βͰ࣮ߦ͢ΔͨΊͷԾ૝తͳػցޠ
    w +BWB4DSJQUͰ͸౸ୡͰ͖ͳ͍ωΠςΟϒίʔυʹ͍ۙੑೳ͕ಘΒΕΔ
    w 8FC"TTFNCMZʹΑΔϋογϡؔ਺ͷ࣮૷
    IBTIXBTN
    w TQBSLNEͱൺֱͯ͠ഒҎ্ͷ଎౓վળ
19. github.com/ddbj/submission-mss