Work Log 08/30

Transcript

1. Bioinformatics and Biostatistics Core, NTU Center of Genomic Medicine, National

   Taiwan University Work Log 08/23 recurrentR DESeq, EdgeR 鴻百合作硬體擴增計畫 2013.09 
   
   Slides by Liang Bo Wang DSTL UNR (DeLaMare Science and Engineering Library) CC2.0 BY-NC-SA

2. Bioinformatics and Biostatistics Core, NTU Center of Genomic Medicine, National

   Taiwan University recurrentR Progress •  Finish 1st paper WQC 2001 –  mostly done by Wush Wu •  Performance Issue –  300 obs requires > 10mins for asymptotic variance 2013.09 
   
   Slides by Liang Bo Wang

3. Bioinformatics and Biostatistics Core, NTU Center of Genomic Medicine, National

   Taiwan University DESeq, edgeR Usage •  DESeq and edgeR are both popular tools used in non-Tophat pipelines 2013.09 
   
   Slides by Liang Bo Wang

4. Bioinformatics and Biostatistics Core, NTU Center of Genomic Medicine, National

   Taiwan University 鴻百合作硬體擴增計畫 •  In September, –  provide golden standard of each results for all tools and pipelines –  approx. 10 TB –  standard 3.5“ SATA / SAS hard disk •  Late 2013 till early 2014 –  online platform development –  Hadoop cluster, 1U 4 nodes –  standard NAS will be the alternative 2013.09 
   
   Slides by Liang Bo Wang