Upgrade to Pro
— share decks privately, control downloads, hide ads and more …
Speaker Deck
Features
Speaker Deck
PRO
Sign in
Sign up for free
Search
Search
Elix, CBI 2022, ランチョンセミナー, 分子構造生成モデルのクイックレビュー
Search
Sponsored
·
Ship Features Fearlessly
Turn features on and off without deploys. Used by thousands of Ruby developers.
→
Elix
October 25, 2022
Technology
480
0
Share
Embed
Copy iframe code
Copy JS code
Copy link
Start on current slide
Elix, CBI 2022, ランチョンセミナー, 分子構造生成モデルのクイックレビュー
Elix
October 25, 2022
More Decks by Elix
See All by Elix
Elix,第42回メディシナルケミストリーシンポジウム,ランチョンセミナー,標的タンパク分解誘導薬開発へのAI活⽤:新たなMolecular Glue Degrader創出に向けて
elix
0
120
Elix,CBI2025,スポンサードセッション,タンパク-タンパク複合体情報を活用した構造生成:TRIM21の新たなリガンド探索に向けて
elix
0
51
Elix, CBI2025,ランチョンセミナー,標的タンパク分解誘導薬開発へのAI活用:新たなMolecular Glue Degrader創出に向けて
elix
0
120
kMoL: An Open-source Machine and Federated Learning Library for Drug Discovery
elix
0
66
SynthFormer: A Customizable Framework for Virtual Synthesis-Based Molecule Generation, Elix, CBI2024
elix
0
190
Optimization of Generator Reward Function Settings for Non-covalent KRAS Inhibitors, Elix, CBI2024
elix
0
360
Open Molecule Generator: A Multipurpose Molecule LLM, Elix, CBI2024
elix
0
210
Elix, CBI2024, ランチョンセミナー, 創薬における連合学習の応用
elix
0
180
Elix, 第1回 AIDD Wednesday, ⼩規模データセットを⽤いた 予測モデルの訓練について
elix
0
780
Other Decks in Technology
See All in Technology
トークンマネジメントでAIにとって働きやすい環境を実現する
hikaruegashira
0
120
作って理解するCoding Agent 〜フレームワークに頼らないピュア Python での実装〜
takapy
1
110
DatadogのBits Chatが開発組織にもたらしたもの / What Bits Chat Has Brought Us
sms_tech
1
290
Model Studio CLI × Token Plan
maigo999
0
200
AI・HPC開発を支えるGPU環境の新しい選択肢 液冷GPUシステム「AquSys」の取り組み
gpuunite_official
0
150
AIで変わるエンジニアの働き方(仮)
naoinaoi
0
220
MulticaとPi Coding Agentで、小規模OSSを30本同時運用した流れ
eiei114
0
130
MIXIで活躍できるエンジニアを 若手社員目線で考えてみる
mixi_engineers
PRO
0
110
カートの信頼性を担保するWireMockを使ったe2eテスト
ykagano
0
610
AI時代に、人は何を、どう学ぶのか #pbl_pub / What and How Do We Learn in the AI Era?
takaking22
1
170
AIに持続⼒を与える 判断の⻑期記憶設計
eiei114
1
420
その“隠したつもり”が命取り ── 自前と平文をやめて「正解」に委ねる
kuroneko13
0
130
Featured
See All Featured
Rails Girls Zürich Keynote
gr2m
96
14k
Lessons Learnt from Crawling 1000+ Websites
charlesmeaden
PRO
1
1.5k
Ten Tips & Tricks for a 🌱 transition
stuffmc
0
170
From Legacy to Launchpad: Building Startup-Ready Communities
dugsong
0
300
Being A Developer After 40
akosma
91
590k
Into the Great Unknown - MozCon
thekraken
41
2.7k
We Analyzed 250 Million AI Search Results: Here's What I Found
joshbly
1
1.8k
Code Review Best Practice
trishagee
74
20k
Collaborative Software Design: How to facilitate domain modelling decisions
baasie
1
280
Paper Plane (Part 1)
katiecoart
PRO
1
10k
Design and Strategy: How to Deal with People Who Don’t "Get" Design
morganepeng
133
19k
Become a Pro
speakerdeck
PRO
31
6.2k
Transcript
Copyright © Elix, Inc. All rights reserved. ࢠߏੜϞσϧͷ ΫΠοΫϨϏϡʔ
גࣜձࣾ&MJY ϦαʔνΤϯδχΞ Ҫ্ وԝ
Copyright © Elix, Inc. All rights reserved. 2 ҩༀΛ͡Ίͱ͢ΔػೳੑԽ߹ͷߏઃܭʹࢼߦࡨޡ͕ඞཁͰɺ࣌ؒͱίετ͕͔͔Δ ➔
ߏઃܭͷखॱΛޮԽͰ͖Δͱศར ػೳੑԽ߹ͷ։ൃϓϩηε ޭ ߏઃܭ ߹ ࢼݧ ࣦഊʜʜ
Copyright © Elix, Inc. All rights reserved. 3 ߏੜث͋ΔछͷߏੜنଇΛ༻͍ͯίϯϐϡʔλ্ͰࢠߏΛൃੜͤ͞ΔϓϩάϥϜ ߏੜثΛ༻͍Δ͜ͱͰଟͷࢠߏΛੜͰ͖Δ
ଟͷࢠߏΛؚΉੜߏ܈͔Βɺॴͷੑ࣭Λ࣋ͭͱظ͞ΕΔ༗ͳԽ߹܈Λநग़͢Δ ➔ ༗Խ߹܈ʹରͯ͠ࢼݧ͢Δ͜ͱͰɺߏઃܭͷखॱΛޮԽͰ͖Δͱظ͞ΕΔ ߏੜث ߏੜث ੜߏ܈ ༗ߏ܈ நग़ ੜ
Copyright © Elix, Inc. All rights reserved. 4 ༩͑ΒΕͨσʔληοτ͔Βࣗಈநग़͞Εͨ ֬Ͱදݱ͞ΕΔ
ߏੜنଇΛ༻͍ͨਂੜϞσϧ ࢠߏͷݱΕ͢͞ σʔλੜ Λදݱ͢Δ ྫ һͱһͰɺһͷํ͕ݱΕ͍͢ $ݪࢠͱ4ݪࢠͰɺ$ݪࢠͷํ͕ࢠʹଟؚ͘·Ε͍ͯΔ ࢠߏͷಛʹҰఆͷ͕͋Δ ➔ ݱΕ͍͢ࢠߏʹରͯ͠ɺߴׂ͍͕֬ΓͯΒΕ͍ͯΔ ➔ ܇࿅ࡁΈϞσϧ͔ΒͷαϯϓϦϯάͰɺ܇࿅αϯϓϧΒ͍͠ ࢠߏΛੜͰ͖Δ Ҏ߱ͰɺਂߏੜثͷछྨԠ༻ʹ͍ͭͯ ؆୯ʹϨϏϡʔ͢Δ ਂߏੜث ߏੜنଇ ੜ ੜߏ܈ ਂߏੜث ࢠߏ σʔληοτ نଇͷநग़
Copyright © Elix, Inc. All rights reserved. 5 ࢠߏͷओͳදݱํ๏ CC(=O)Nc1cccc1
ਂߏੜثͷೖग़ྗʹར༻͞ΕΔࢠߏͷදݱํ๏ɺओʹछྨ͋Δ • จࣈྻʹΑΔදݱ • ࢠάϥϑʹΑΔදݱ • ࣍ݩ࠲ඪʹΑΔදݱ ҎԼɺͦΕͧΕͷಛʹ͍ͭͯ֓આ͢Δ
Copyright © Elix, Inc. All rights reserved. 6 • จࣈྻτʔΫϯͱݺΕΔ࠷খͷߏ୯Ґ͕ฒΜͩͷ
◦ τʔΫϯࣗવݴޠʹ͓͚Δ୯ޠʹ૬ ◦ 4.*-&4จࣈྻͰݩૉ͝ͱʹҰͭͷτʔΫϯΛͳ͢ͱߟ͑Δ͜ͱ͕ଟ͍ • ࢠߏΛग़ྗ͢Δͷʹѻ͍͍͢ ◦ طʹಘΒΕͨจࣈྻʹଓ͘τʔΫϯΛ֬తʹग़ྗ ݴޠϞσϧ • ଟ͘ͷϞσϧͰར༻͞Ε͍ͯΔͷ4.*-&4จࣈྻ ◦ Ұఆͷจ๏ʹैͬͯτʔΫϯ͕ฒΜͰ͍Δ • 4.*-&4ͷจ๏ʹैΘͳ͍จࣈྻɺࢠߏΛදݱ͠ͳ͍ແޮͳจࣈྻ ➔ 4.*-&4จࣈྻͷΘΓʹ4&-'*&4<>Λ༻͍ͨΓɺจ๏ΛߟྀͰ͖ΔϞσϧ FH (SBNNBS7"&<> 4%7"&<> Λར༻͢ΔͳͲͷ͕ͳ͞Ε͍ͯΔ จࣈྻʹΑΔදݱ CC(=O)Nc1cccc1 <>.,SFOO FUBM.BDI-FBSO4DJ5FDIOPM <>.+,VTOFS FUBM*$.- 1.-3 <>)%BJ FUBM*$-3
Copyright © Elix, Inc. All rights reserved. 7 • ࢠάϥϑݪࢠɾ݁߹ΛɾลʹରԠͤͯ͞Ͱ͖Δ
࿈݁ͳ άϥϑ ◦ ࣮ମɺྡߦྻͱݪࢠɾ݁߹ͷछྨΛද͢ଟ࣍ݩྻͷ ◦ ࢬ͔Εͱ͍ͬͨߏͷใΛ໌ࣔతʹදݱͰ͖Δ • ࢠάϥϑͷग़ྗํ๏ ◦ ҰׅੜྡߦྻͳͲͷσʔλΛੜ ◦ ஞ࣍ੜطʹಘΒΕͨ෦άϥϑʹݪࢠɾ݁߹Λ֬తʹՃ͠ͳ͕Βੜ • ࢠάϥϑͷ֤Ձ੍Λຬͨ͢ඞཁ͕͋Δ ◦ ҰׅੜՁ੍Λຬͨ͞ͳ͍ແޮͳάϥϑ͕ੜ͍͢͠ ◦ ஞ࣍ੜՃ͢Δݪࢠɾ݁߹ʹ੍Λ͔͚Δ͜ͱͰ༗ޮͳάϥϑΛ ੜ͍͢͠ ࢠάϥϑʹΑΔදݱ CC(=O)Nc1cccc1
Copyright © Elix, Inc. All rights reserved. 8 • ࢠΛߏ͢Δ֤ݪࢠͷछྨͱҐஔ
࣍ݩ࠲ඪ Λهͨ͠܈σʔλ ◦ ࢠߏͷίϯϑΥϝʔγϣϯͳͲɺཱମతͳใΛදݱ͍͢͠ • ࣍ݩ࠲ඪͷग़ྗํ๏ ◦ Ұׅੜ܈ΛҰʹੜ ◦ ஞ࣍ੜطʹಘΒΕͨ܈σʔλʹ৽ͨͳݪࢠΛ֬తʹՃ͠ͳ͕Βੜ • Ͳ͏͠ͷڑΛར༻ͯ͠ɺ܈σʔλ͔ΒࢠάϥϑΛߏͰ͖Δ ◦ ܈σʔλ͔Βߏͨ͠ࢠάϥϑՁ੍Λຬͨ͢ඞཁ͕͋Δ ࣍ݩ࠲ඪʹΑΔදݱ CC(=O)Nc1cccc1
Copyright © Elix, Inc. All rights reserved. 9 ਂߏੜثͰར༻͞Ε͍ͯΔయܕతͳϞσϧͷछྨҎԼͷͱ͓Γ •
ࣗݾճؼܕϞσϧ • มΦʔτΤϯίʔμ 7"& • ఢରతੜωοτϫʔΫ ("/ • ϑϩʔϕʔεϞσϧ • ֦ࢄϞσϧ • ΤωϧΪʔϕʔεϞσϧ ҎԼɺ۩ମతͳਂߏੜثΛڍ͛ͳ͕Β֓ཁΛհ͢Δ ϞσϧͷछྨʹΑΔਂߏੜثͷྨ
Copyright © Elix, Inc. All rights reserved. 10 • ݱࡏͷঢ়ଶΛೖྗ͢Δͱɺঢ়ଶΛमਖ਼͢Δૢ࡞ͷ֬Λࢉग़Ͱ͖ΔϞσϧ
➔ αϯϓϦϯάͨ͠ૢ࡞Ͱݱࡏͷঢ়ଶΛ܁Γฦ͠मਖ਼͢Δ͜ͱͰੜ • ྫ ◦ จࣈྻ$IFN54<> 3&*/7&/5<> ▪ 4.*-&4ݴޠϞσϧ ڧԽֶशͰॴͷੑɾ׆ੑΛ࣋ͭ ࢠΛੜ ◦ ࢠάϥϑ%(.(<> ▪ ݪࢠछͷαϯϓϦϯάͱ݁߹छɾҐஔͷαϯϓϦϯάΛ܁Γฦ͢ ◦ ࣍ݩ࠲ඪ(4DI/FU<> ▪ ݪࢠछͷαϯϓϦϯάͱஔ͢ΔҐஔͷαϯϓϦϯάΛ܁Γฦ͢ ࣗݾճؼܕϞσϧ Cl c 1 c c c c ೖྗ ੜ్த ࣗݾճؼܕ Ϟσϧ c: 40 % C: 7 % n: 10 % ộ [EOS]: 0.2% ग़ྗ ֤ૢ࡞ͷબ֬ Cl c 1 c c c c c मਖ਼͞Εͨೖྗ αϯϓϦϯά <>9:BOH FUBM4DJ5FDIOPM"EW.BUFS r <>.0MJWFDSPOB FUBM+$IFNJOGPSN r <>:-J FUBMBS9JW QSFQSJOU BS9JW <>/(FCBVFS FUBM/FVS*14
Copyright © Elix, Inc. All rights reserved. 11 • ࣍ݩͷϕΫτϧ
જࡏม ͔ΒαϯϓϧΛੜ͢ΔϞσϧ ◦ Τϯίʔμαϯϓϧ ➔ જࡏม ◦ σίʔμજࡏม ➔ αϯϓϧ • αϯϓϧ͔ΒٻΊͨજࡏม͔Βɺݩͷαϯϓϧ͕࠶ߏ͘͢͠ͳΔΑ͏܇࿅ ➔ જࡏมʹ܇࿅σʔληοτͷಛ͕ө͞ΕΔ • ྫ ◦ จࣈྻ$IFNJDBM7"&<> ▪ 4.*-&4จࣈྻΛೖग़ྗʹ༻͍ͨγϯϓϧͳ7"& ◦ ࢠάϥϑ+VODUJPO5SFF7"&<> ▪ ෦ߏͷͭͳ͕ΓΛදݱ͢ΔδϟϯΫγϣϯͱࢠάϥϑͦΕͧΕ ʹର͢Δ7"&Ͱߏੜ มΦʔτΤϯίʔμ 7"& ೖྗ ࠶ߏ͞Εͨ ೖྗ જࡏม Τϯίʔμ σίʔμ <>3(ÓNF[#PNCBSFMMJ FUBM"$4$FOU4DJ r <>8+JO FUBM*$.- 1.-3
Copyright © Elix, Inc. All rights reserved. 12 • ࣍ݩͷϕΫτϧ
જࡏม ͔ΒαϯϓϧΛੜ͢ΔϞσϧ ◦ δΣωϨʔλજࡏม ➔ αϯϓϧ ◦ σΟεΫϦϛωʔλੜαϯϓϧ͔܇࿅αϯϓϧ͔Λఆ • ೋͭͷωοτϫʔΫΛڝ͍߹ΘͤΔΑ͏ʹ܇࿅ ➔ δΣωϨʔλ͕܇࿅αϯϓϧΒ͍͠ߏΛੜͰ͖ΔΑ͏ʹ • ஞ࣍తʹੜ͢Δ߹ڧԽֶशͱซ༻͢Δ͜ͱ͕ଟ͍ • ྫ ◦ จࣈྻ03("/*$<> ▪ ݴޠϞσϧʹΑΔδΣωϨʔλΛڧԽֶशͰ܇࿅ ◦ ࢠάϥϑ($1/<> ▪ ࢠάϥϑੜͷࣗݾճؼܕϞσϧΛڧԽֶशͰ܇࿅ ఢରతੜωοτϫʔΫ ("/ જࡏม δΣωϨʔλ ੜ αϯϓϧ ܇࿅ αϯϓϧ ܇࿅ σʔληοτ σΟεΫϦϛωʔλ 0.87 ೖྗ͕ ܇࿅αϯϓϧ Ͱ͋Δ֬ <>#4BODIF[-FOHFMJOH FUBM$IFN3YJW QSFQSJOU DIFNSYJWW <>+:PV FUBM/FVS*14
Copyright © Elix, Inc. All rights reserved. 13 • જࡏมʹෳͷՄٯͳมมΛద༻ͯ͠αϯϓϧΛੜ͢ΔϞσϧ
◦ જࡏมͷɺαϯϓϧ͘͢͢͠ΔͨΊ୯७ͳͷʹઃఆ ◦ ܇࿅αϯϓϧ͕ͲͷఔϞσϧ͔ΒಘΒΕ͍͔͢ Λਖ਼֬ʹܭࢉͰ͖Δ ◦ มมͷύϥϝʔλʹχϡʔϥϧωοτϫʔΫΛར༻ ◦ ͲͷΑ͏ͳมมΛར༻͢Δ͔ʹΑͬͯόϦΤʔγϣϯ͕͋Δ • ܇࿅αϯϓϧʹର͢ΔΛ࠷େԽ͢ΔΑ͏ʹ܇࿅ • ྫ ◦ ࢠάϥϑ(SBQI/71<> ▪ ݪࢠɾ݁߹ͷछྨΛද͢ଟ࣍ݩྻΛੜ͢ΔछྨͷϑϩʔϕʔεϞσϧ ΛΈ߹ΘͤͯɺࢠάϥϑΛҰׅੜ ϑϩʔϕʔεϞσϧ ੜ αϯϓϧ જࡏม ộ ộ Մٯͳ มม <>,.BEIBXB FUBMBS9JW QSFQSJOUBS9JW
Copyright © Elix, Inc. All rights reserved. 14 • (BVTTܕϊΠζ͔ΒϊΠζΛஞ࣍తʹআڈ͢Δ͜ͱͰαϯϓϧΛੜ͢ΔϞσϧ
◦ αϯϓϧʹͩΜͩΜϊΠζ͕ͷΔ ֦ࢄ͢Δ ͜ͱͰ݁Ռతʹ(BVTTܕϊΠζ ͕ಘΒΕͨͱߟ͑Δ ◦ ֦ࢄͷ֤ஈ֊Ͱαϯϓϧʹ͔͔͍ͬͯΔϊΠζͷྔΛਪఆ͢Δͷʹ ωοτϫʔΫΛར༻ • ϊΠζΛఴՃͨ͠܇࿅αϯϓϧ͔ΒɺఴՃ͞ΕͨϊΠζͷྔΛ͏·͘ਪఆ Ͱ͖ΔΑ͏ʹωοτϫʔΫΛ܇࿅ • ྫ ◦ ࣍ݩ࠲ඪ& &%.<> ▪ & ରশੑ ฒਐɾճసɾసʹؔ͢Δରশੑ Λ֦࣋ͬͨࢄϞσϧʹ ΑΓ܈Λੜ͢Δ͜ͱͰɺ࣍ݩߏΛҰׅੜ ֦ࢄϞσϧ <>&)PPHFCPPN FUBM*$.- 1.-3 ੜ αϯϓϧ (BVTTܕ ϊΠζ ộ ộ ϊΠζͷ আڈ 𝜺! 𝜺!"# 𝜺#
Copyright © Elix, Inc. All rights reserved. 15 • σʔλੜͷΘΓʹαϯϓϧʹର͢ΔΤωϧΪʔΛωοτϫʔΫ
ͰϞσϧԽ͢Δ͜ͱͰɺσʔλੜΛؒతʹϞσϧԽ͢Δ ◦ ΤωϧΪʔͷ͍αϯϓϧ͕ੜ͞Ε͍͢ ◦ ΤωϧΪʔͷઃܭʹΑͬͯɺੑɾ׆ੑͷ୯తɾଟత࠷దԽ Մೳ • ੜαϯϓϧʹରͯ͠ΤωϧΪʔΛߴ͘͠ɺ܇࿅αϯϓϧʹରͯ͠ ΤωϧΪʔΛ͘͢ΔΑ͏ʹ܇࿅ ➔ ܇࿅αϯϓϧΒ͍͠ߏ͕αϯϓϦϯά͞Ε͘͢ͳΔ • ྫ ◦ ࢠάϥϑ(SBQI&#.<> ▪ ݪࢠɾ݁߹ͷछྨΛද͢ଟ࣍ݩྻΛੜ͢ΔΤωϧΪʔ ϕʔεϞσϧͰࢠάϥϑΛҰׅੜ ΤωϧΪʔϕʔεϞσϧ <>.-JV FUBMBS9JW QSFQSJOU BS9JW 𝐸 ੜ αϯϓϧ ܇࿅ αϯϓϧ ΤωϧΪʔ ϕʔε Ϟσϧ ΤωϧΪʔ Ҿ্͖͛ ΤωϧΪʔ Ҿ͖Լ͛
Copyright © Elix, Inc. All rights reserved. 16 σʔληοτɾ܇࿅ํ๏ɾϞσϧͷͰɺੜ͞ΕΔࢠߏ͕దͳ݅Λຬͨ͢Α͏ʹ੍ޚͰ͖Δ ੜߏͷ੍ޚ
<>4;IFOH FUBM+$IFNJOGPSN r • ॴͷࠎ֨Λ ͋Δఔ ༗͢Δߏͷੜ ◦ సҠֶशͷར༻ ▪ ॴͷࠎ֨ΛؚΉσʔληοτͰ ϑΝΠϯνϡʔχϯά͢Δ͜ͱͰ֘ͷ ࠎ֨ΛؚΉߏ͕૿Ճ<> ◦ ߏมϞσϧͷར༻ ▪ ߏΛೖྗ͢Δͱɺม͞Εͨߏ͕ ग़ྗ͞ΕΔϞσϧ ▪ ڐ༰͞ΕΔೖग़ྗͷύλʔϯΛదʹ ઃఆͯ͠܇࿅͢Εɺೖྗߏͷࠎ֨Λ ͋Δఔݻఆͯ͠ߏੜͰ͖Δ • ॴͷੑɾ׆ੑΛ࣋ͭͱ༧͞ΕΔߏͷੜ ◦ ༧ଌϞσϧͷಉ࣌܇࿅ ▪ 7"&ͳͲͰ જࡏม͔Βੑɾ׆ੑΛ ༧ଌ͢ΔϞσϧΛར༻ͨ͠જࡏมͷ ࠷దԽ ◦ ڧԽֶशͷར༻ ▪ ࣗݾճؼܕϞσϧͳͲͰ ࠷దԽ͍ͨ͠ ੑɾ׆ੑΛใुͱͯ͠ར༻
Copyright © Elix, Inc. All rights reserved. 17 • ਂߏੜث
ࢠߏͷσʔλੜΛχϡʔϥϧωοτϫʔΫͰϞσϧԽͨ͠ͷ • ೖग़ྗͷࢠߏͷදݱ จࣈྻ ࢠάϥϑ ࣍ݩ࠲ඪ • Ϟσϧͷछྨ ࣗݾճؼܕϞσϧ 7"& ("/ϑϩʔϕʔεϞσϧ ֦ࢄϞσϧ ΤωϧΪʔϕʔεϞσϧ • ੜߏͷ੍ޚ ॴͷੑɾ׆ੑΛ࣋ͭͱ༧͞ΕΔߏͷੜ ॴͷࠎ֨Λ ͋Δఔ ؚΉߏͷੜ ·ͱΊ
Elix, Inc. https://elix-inc.com/ Copyright © Elix, Inc. All rights reserved.
18