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citing data using JATS

citing data using JATS

how to map data citation to JATS tags.

Ian Mulvany

June 20, 2014
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Transcript

  1. What’s the smallest thing we can do,
    that can have the biggest effect?

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  2. Is it a Bird? Is it a Plane?
    in reference list:
    publication-type="other"
    Tagged as
    Journal
    http://europepmc.org/articles/
    PMC3646594
    publication-type="thesis"
    http://europepmc.org/articles/
    PMC3722494
    publication-type="webpage"
    http://europepmc.org/articles/
    PMC3626513
    publication-type="journal"
    http://europepmc.org/articles/
    PMC3661987
    Placenta
    Gigascience
    Frontiers in Physiology
    Optical Express
    with thanks to @jomacyntyre
    F1000
    publication-type="book"

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  3. Let’s all tag data the same way!!

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  4. JATS

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  5. Proposal A - Best Practice
    Proposal B - Addition
    Proposal C - Extension

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  6. Identify the key fields
    Map them to JATS
    Propose sensible additions to JATS where needed
    Set out JATS usage that make data links machine readable

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  7. Identify the key fields

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  9. 31
    data description attributes

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  10. 53
    groups providing guidance

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  11. name
    Publication/Release Date /Year
    Title/Name of the Dataset
    Version/Edition
    Resource Type
    Persistent Global Identifier/ Locator (DOI/URL)
    Publisher/Distributor/ Repository/ Data Center /Archive
    Location of publisher/distributor
    Access Date(s) and Time
    Additional URI/Location /bridge service
    Secondary distributor/ other Institutional Role

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  12. Map them to JATS

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  13. bit.ly/data2jatsv1

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  14. Set out JATS usage that make data links machine readable

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  15. !
    !
    !
    !
    !
    !
    !
    !

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  16. !
    !
    !
    !
    !
    !
    !
    !

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  17. Propose sensible additions to JATS where needed

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  18. !
    !
    !
    !
    !
    !
    !
    ext-link extended to take: @issuing-agency=“pdb”!
    pub-id extended to take: @xlink!
    name extended to take: @id (of some kind)!
    !

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  19. Questions
    Are there any serious objections to adopting specific-use=“data”
    and publication-type=“data”
    Is it possible to identify when to use these tags within a typesetting
    workflow?
    Would this group make use of the proposed additions, in time?
    Do we need to provide more machinery later to support more
    extensible data citation?

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  20. Conclusions
    Most of the use cases for data citation can be implemented today
    JATS documentation can be updated very soon to reflect these
    cases
    Proposed additions could be trialled with reasonable ease
    The power to solve this issue lies with us - let’s do it!

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  21. Actions
    Sign off on the proposed mapping
    Sign off on the proposed additions
    Generate best practice examples
    Publish documentation on JATS docs
    Implement in our editorial processes
    Relax with the warm glow of a job well done
    get sign off on the data spreadsheet of ALL THE THINGS
    Submit proposals to the NISO site

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