BioRuby

Transcript

2. http://www.curiositiesbydickens.com/wp-content/uploads/funny-mouse.jpg
3. Taking part in @rubyconf5k ?
6. “Gene” the Genie
8. Where is this GENE????
9. DNA
10. Does this sequence seems ok? AATTGGTTTGCTATATCCCGTCTCTCTAGCTAGATATTTCA TATACGCCCGTCTCTCTAATTGCACTCCATAGCTATATGA GCTATCGTAGTDGATGCTAAGCAGCAGTGCACTAGATATC ATTTGOTAATATGCTAATTTGCCGTCGATCGGATCPAGCA TCTATTCTATTCTGFGCTATCTATTCTCTGCTACGGAACTG GCTGCTGATCTCTCTTAGCTAGCTTCTCTATTACGTTGCCA ATATATDTGATGCCCTAGCTGAGAGTCGATAACGTTCGAG CTGCGCGTTCGCGGTAGCGGATGCGTATGTTCAAGCCAT GCTGAGCTGAGCTGAGGAGAGTCGTATCGATTCGGGATC TCTTAGCTAQCTTCTCTATATTACGTTGCATGATGCCGTAG CTGCGCGTTCGCGGTAGCGGATGCGTATGTTCAAGCCAT
11. AATTGGTTTGCTATATCCCGTCTCTCTAGCTAGATATTTCA TATACGCCCGTCTCTCTAATTGCACTCCATAGCTATATGA GCTATCGTAGTDGATGCTAAGCAGCAGTGCACTAGATATC ATTTGOTAATATGCTAATTTGCCGTCGATCGGATCPAGCA TCTATTCTATTCTGFGCTATCTATTCTCTGCTACGGAACTG GCTGCTGATCTCTCTTAGCTAGCTTCTCTATTACGTTGCCA ATATATDTGATGCCCTAGCTGAGAGTCGATAACGTTCGAG CTGCGCGTTCGCGGTAGCGGATGCGTATGTTCAAGCCAT GCTGAGCTGAGCTGAGGAGAGTCGTATCGATTCGGGATC TCTTAGCTAQCTTCTCTATATTACGTTGCATGATGCCGTAG CTGCGCGTTCGCGGTAGCGGATGCGTATGTTCAAGCCAT
12. Part of a DNA sequence
13. 3 BILLION BASE PAIRS
15. Amino Acid & Protein
20. BioRuby with Bioinformatics
21. •  An international research effort •  HGP was done to sequence all genes (genome) of our species, Homo sapiens. •  Completed in April 2003. •  Approx 3 Billion base pairs are present in each human. •  3GB data stored in each cell •  75-100 trillion cells in body(along with the bacteria and all)
22. History of Bioruby • Nov 2000 Bioruby Start • June2001 1st version of Bioruby • 2005-2006 IPA Exploratory Software Project • Feb 2006 Bioruby 1.0.0 released • Sept 2008 Moved CVS to GIT • Aug 2010 Published Bioruby Research Paper • May 2013 Bioruby 1.4.3.0001 (Latest stable version of Bioruby)
23. Bioinformatics Tools
24. BLAST output
26. Biogems
27. Biogems
30. Leffingwell.com
31. Next Generation Sequencing: NGS
32. How can we contribute?
33. How can we contribute? Publish more Biogems :) • Webhttp://bioruby.org • MLbioruby@lists.open-bio.org • GitHubhttps://github.org/bioruby/bioruby
35. “Gene“ is not our destiny!
36. Doel Sengupta Manu Singhal @doelsengupta @singhal_manu
37. Thank you !!
38. References BioRuby The Ruby UCSC API: accessing the UCSC genome database using Ruby NCBI Blast Tutorial yw-jakartarb20101031key By Yannick Wurm bioruby-bioinformatics-library By Naohisa Goto bonnal-bosc2010-bioruby By Raoul J.P Bonnal