090624_iSEE_exercises

Slides containing the exercises for "Interactive SummarizedExperiment visualizations" at https://meetings.cshl.edu/courses.aspx?course=C-DATA&year=24

Transcript

1. iSEE Exercises CSHL - Statistical Analysis of Genome Scale Data Melissa Mayén Quiroz 6/9/2024
2. Which panel Type is displaying the following plot? Reduced dimension plot Column data table Column data plot Feature assay plot Row data table Row data plot Sample assay plot Complex heatmap Reduced dimension plot
3. Recreate:
4. Parameters:
5. What is different between this 2 plots?
6. Recreate:
7. Parameters:
8. What is different between this 2 plots?
9. Plot 2 Parameters:
10. Recreate: Ensembl IDs ENSG00000177757 ENSG00000237491 ENSG00000238009 ENSG00000243485
12. Recreate the following plot. What would you change from the last one? Ensembl IDs ENSG00000177757 ENSG00000237491 ENSG00000238009 ENSG00000243485
14. Recreate the following plot. What would you change from the last one? Ensembl IDs ENSG00000177757 ENSG00000237491 ENSG00000238009 ENSG00000243485
16. Download only the last plot (Final HeatMap)
18. Extract the R code only for the last plot. (Final HeatMap)