Jessa- ziekenhuis

Transcript

1. Ontdek de kracht van Posit bij het Jessa-ziekenhuis Annick Daniels Wetenschapper – Klinisch laboratorium Thomas Wouters Account Manager Business Insights
2. Agenda Welkom & introductie door AXI Wie zijn wij & Wie is aanwezig? 2 use-cases van shiny-apps, Opzet van het Posit-Connect platform Uitleg BALLETT-studie - Platform dat wordt gedeeld binnen 13 ziekenhuizen in België voor de dienst oncologie Uitleg Posit producten + demo Connect Q&A & Afsluiting
3. Annick Daniels Wetenschapper – Klinisch laboratorium Jessa-ziekenhuis case
4. Het Jessa-ziekenhuis in cijfers
5. Finance consolidatie applicatie • Shiny-applicatie BALLETT-applicatie voor oncologie • Shiny-applicatie Use-cases
6. Posit connect Ubuntu22.04 R & Python Opzet Connect-platform
7. R Shiny app Finance Allocatie ✓ Doel: ✓ Inzicht in de oorzaak van evolutie van BFM op niveau kostenplaats ✓ Vergelijk tussen kostenplaatsen ✓ Alarmtabel voor wijzigingen van sleutels en boekingen ✓ Overzicht toegepaste allocatie methoden ✓ Status: ✓ Zeer bruikbare tool ✓ Visualisatie m.b.v. R shiny app: dashboard ✓ Plannen ✓ Upgrade i.s.m. AXI ✓ Meer selecties ✓ Trend visualisatie ✓ Layout Frederic Vanswijgenhoven
8. BALLET STUDIE: Participating parties offering broad support • Belgian Scientific Institute of Public Health: • Advises the Belgian government on NGS indications and requirement for reimbursement (ComPerMed.be) • Belgian Society of Medical Oncology: • National scientific working group for oncologists • Commercial parties Annick Daniels Klinisch laboratorium Moleculaire
9. BALLETT-Studie ✓ Belgian Approach of Local Laboratory Extensive Tumor Testing ✓ Project waar 13 verschillende Belgische ziekenhuizen aan meewerken ✓ Doel: Meerwaarde te onderzoeken van uitgebreid tumoronderzoek (Comprehensive Genomic Profiling of CGP) bij de toewijzing van een gepaste behandeling bij kankerpatiënten ✓ CGP focust op het vinden van zowel kleine genetische mutaties alsook grotere genetische varianten + enkele andere tumor gerelateerde genetische parameters
10. BALLETT-Studie ✓ Noden: ✓ Snelle en gemakkelijke beschikbaarheid van gegevens van een patiënt voor wekelijkse bespreking op MolecularTumor Board ✓ Dashboard met algemene statistieken over alle patiënten heen ✓ Rekening houden met: ✓ Veiligheid ✓ Overzichtelijkheid ✓ Eenvoudig te delen
11. Z01 Z02 Z03 Z04 Z05 Z06 Z07 Z08 Z09 Z10 Z11 Z12 Z01 Z02 Z03 Z04 Z05 Z06 Z07 Z08 Z09 Z10 Z11 Z12 Dashboard > Tabs met samenvattende statistieken over studie heen > tab Patients
12. Overzicht van patiënten te bespreken op MTB patA patB patC patC patE patF patG
13. Data per patiënt > tab Comprehensive Genomic Profiling (CGP) results PatX 65 Cancer X X 05/02/2023
14. Data per patiënt > rapport – preview en te downloaden als pdf Who PatX PatX X 65 Cancer X 05/02/2023
15. AXI & Posit Thomas Wouters Account Manager Business Insights
16. onderbouwd.duurzaam.dichtbij AXI in cijfers
17. AXI Analytics & Insights increases your analytics maturity to enable serious data science ARCHITECTURE DATA SCIENCE DATA ENGINEERING Data- Driven Apps
18. The Evolution of BI Everyone Analyst to end user IT to end user 2nd wave Self-service BI 1st wave Corporate BI 3rd wave End user BI
19. 01 02 03 04 Dashboards Data-Driven Apps Parametrized Reports Analytic Models Pattern Analysis KPI Dashboard 360 View What-if Analysis Simulation Tools ML Models Automated Reports Reproducible Research Scheduled Refresh Recommenders Forecasting API ML Models
20. About Rstudio - Posit
22. ⌵ ⌵ Serious Data Science: Solutions POSIT SOLUTIONS Automated Decisions Share insights to impact decision making Web Apps Scheduled Emails Tailored Applications, Reports, & APIs using to build published to informs DATA SCIENCE TEAMS Decision Makers Create Insights APIs informs integrate into
23. ⌵ ⌵ POSIT SOLUTIONS Posit Workbench Analyze data and create insights using R and Python Posit Workbench is the enterprise-level integrated development environment for data scientists who need to develop, collaborate, and scale in R and Python. • Program in your preferred IDE (RStudio, VSCode, JupyterLab, Jupyter Notebook) • Load balance between servers • Connect to your data with Posit Professional Drivers • Collaborate and share projects • Scale with Kubernetes, SLURM, and other HPC environments • Stay safe with authentication, access, & security • Run multiple concurrent R and Python sessions • Execute remote sessions with Launcher • Stay aware with auditing and monitoring • Manage R and Python sessions • Receive end-user support documentation learn more...
24. ⌵ ⌵ Posit Package Manager Organize and manage packages that data scientists need to create and share insights POSIT SOLUTIONS Posit Package Manager is a repository management server to organize and manage R and Python packages across your organization. • Access to CRAN, Bioconductor, and PyPI mirrors • Publish and share internal packages • Restrict package access • Pre-built Linux binaries • Bring your own binaries • Restrict package access • Find packages across repositories • Offline access to sources if required documentation learn more...
25. ⌵ ⌵ POSIT SOLUTIONS Posit Connect Share insights with decision-makers, via web applications, email, or APIs Posit Connect is the enterprise-level platform for hosting and sharing your data science products. • Shiny for R, Shiny for Python, Dash, Bokeh, and Streamlit applications • R Markdown and Quarto reports, dashboards, websites and more • Jupyter Notebooks • Plumber, FastAPI, and Flask APIs Connect provides: • Custom authentication configurations • Scheduled republishing of reports • Curation tools for your content items documentation learn more...
26. Posit Connect Content Page
27. Publish
28. Category Description Shiny server Open Source Posit Connect Shinyapps.io Overview Commercial License (not AGPL) RStudio Support Deploy Shiny applications to the Web Push-button publishing from RStudio IDE Deploy and access Shiny apps, dashboards, R Markdown reports, static plots, and APIs in one place Deploy and access Python-based content, including Flask, Dash, Streamlit and Bokeh Scheduled updates and distribution of reports Self-managed content - see and manage what you’ve published or can access from others Publishers only Support Professional Drivers - connect to some of the most popular databases Connect vs Shiny Server vs Shinyapps.io
29. Category Description Shiny server Open Source Posit Connect Shinyapps.io Security & Authentication Password protect applications Deploy Shiny applications behind firewalls Controlled access via SSL and LDAP, Active Directory, Google OAuth, PAM, proxied authentication, or passwords Tuning & Scaling Scale applications across multiple R processes Persistent R processes for faster load times Metrics & Management Performance and resource metrics Health check endpoint Connect vs Shiny Server vs Shinyapps.io
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