Advances in Metabolomics Experiments and opportunities for Pathway and Network Analysis

Advances in Metabolomics Experiments and opportunities for Pathway and Network Analysis

Some highlights of #metsocdublin2016

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Egon Willighagen

July 07, 2016
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  1. Advances in Metabolomics Experiments and opportunities for Pathway and Network

    Analysis Egon Willighagen 2016-07-07 @egonwillighagen
  2. Metabolomics 2016 http://metabolomics2016.org/

  3. #metsocdublin2016

  4. Plenary Speaker: Jeremy Nicholson Metabolic profiling in system medicine Metabonome

    := the collection of species specific metabolomes creating a distance matrix for KEGG is complex mathematics Lysine as disease marker
  5. Plenary Speaker: Luke O'Neill (@laoneill111) why we cherish glucose and

    become insuline resistant instead The intersection between inflammation and metabolism NLRP3, that has an essential role in inflammation as a sensor of pathogens mentions the 500 known cytokines Metformin to reduce inflammation succinate. Blocks PHD -> HIF-1alpha -> IL-1beta... succinate in inflamed tissue
  6. Plenary Speaker: Ines Thiele Now working on AGORA to capture

    microbial metabolism
  7. Some Speaker: Ric de Vos WP3682 by Justin van de

    Hooft
  8. Bruker Daltonics: PathVisio logo on slides Aiko Barsch http://bruker-marketing.actonsoftware.com/acton/attachment/4047/u-00d0/0/-/-/-/-/

  9. Technological advancements Waters: collision cross section: http://www.waters.com/waters/library.htm?cid=511436&lid=134743905 http://chemwiki.ucdavis.edu/Core/Physical_Chemistry/Kinetics/Modeli ng_Reaction_Kinetics/Collision_Theory/Collisional_Cross_Section

  10. Pathway and Network Analysis session ~180 attendents

  11. Keynote Speaker: Matt DeJongh ModelSEED https://github.com/ModelSEED

  12. Plenary Speaker: Tsutomu Masujima Fujii et al. Aug. 2015. Direct

    metabolomics for plant cells by live single-cell mass spectrometry. Nature Protocols 10 (9), 1445-1456. http://dx.doi.org/10.1038/nprot.2015.084
  13. Metabolomics Forum http://www.metabolomics-forum.com/

  14. More on Lanyrd http://lanyrd.com/2016/metsocdublin2016/