68th Tokyo.R Beginner session1

第68回Tokyo.Rの初心者セッション１：data import/exportのスライドです。

Transcript

1.    
    @kilometer BeginneR Session 1 -- Data Import / Export -- 2018.03.03 at Shiodome
2. Who
    
   
3. Who   @kilometer  Postdoc (Ph.D engineering)   Animal Behavior Neuro Imaging Medical Engineering R ~ 10 years?  : 
   
4. BeginneR Session
5. 
   
6. 
   
7. Before After BeginneR Session
   
   
8. Input Output Today’s talk ? ? Table data Image data Other formats Introduction Summary
9. 
   !   #      $"    
    $    $ 
     
   
10. 
    #  %       &$  
    ! & ! & 
     "
          
11. 
       !    "   
     "  " 
      
12. 
       !    "   
     "  " 
      
13. Input Output Do NOT start from here
14. Input Output Do NOT start from here Whatever …
15. Input Output Do NOT start from here Whatever … 1 2 3
16. Input Output Today’s talk ? ?
17. Integrated Development Environment RStudio https://www.rstudio.com/ !
18. Integrated Development Environment RStudio https://www.rstudio.com/
19. RStudio
20. Projects RStudio
21. RStudio > Project .H21474836474<: G RStudio 7@
    ,R&-%("#+!')0FC ,')JA!3? ,')6=!("#+!3< RStudio!E1  
    ฤू్தͷ಺༰Λอ࣋  D5921474836472R*-$-QOL!;8/ 
    BI >   34UVEJPͬͯͳΜͩʁ 1SPKFDUͬͯͳΜͩ !XBLVUFLB https://qiita.com/wakuteka/items/9599bb0a8985d98928d7
22. RStudio > Project R   +(  .'"&  #%"$ RStudio)!  
    *- , #%"&   34UVEJPͬͯͳΜͩʁ 1SPKFDUͬͯͳΜͩ !XBLVUFLB https://qiita.com/wakuteka/items/9599bb0a8985d98928d7
23. File > New Project… > New Directory > New Project hogehoge
24. hogehoge ~/Documents/R hogehoge.Rproj .Rproj.user Project Root Directory Double click!! .RData .Rhistory Auto saved project information Open project New!!
25. ~/Documents/R project1 project2 project3 project4
26. Input Output Today’s talk ? ? Table data Image data Other formats Summary Introduction
27. Table format data Table data Image data Other formats Introduction Summary
28. Table format data Comma-separated values (.csv) Tab-separated values (.tsv) Space-SV Semicolon-SV … Delimiter-separated values or Character-SV
29.      
    
     Import Table format data object assignment operator file path function
30.      
    
     Import Table format data object assignment operator file path function
31. ~/Documents/ import.txt  data 
               
        or 1. set working directory 2. then use relative path Method②: use absolute path Method ① Import Table format data
32. # # Method②: use absolute path Method ①: setwd – relative path " # or
33. prj ~/Documents/R prj.Rproj import.txt Default working directory (project root)   
         can use relative path without  
34.   
     Import Table format data
35.   
     Import Table format data 
    
36. ) ! ( ) ! ! ( ) ∖ # " !( !! ! (( # ! (( # ! (( # " ( ! # " ( ( ( () # ( ( ) ( # () # ( ! ! (( ( # ( ( # " ( !! ! # ! # ( ( () ) ! # ! # ( ( "" #) !! ( ( ! ( () # ( ( ) ( !) () # ( ( ) ( ! # # # # # # # ) ,) ( ! Import Table format data
37. ) ! ( ) ! ! ( ) ∖ # " !( !! ! (( # ! (( # ! (( # " ( ! # " ( ( ( () # ( ( ) ( # () # ( ! ! (( ( # ( ( # " ( !! ! # ! # ( ( () ) ! # ! # ( ( "" #) !! ( ( ! ( () # ( ( ) ( !) () # ( ( ) ( ! # # # # # # # ) ,) ( ! Import Table format data
38. 
     Usage read.table(file, skip = 0, header = FALSE, nrows = -1, row.names, fileEncoding = "") Import Table format data
39. cf. R-Tips: 40. 
       http://cse.naro.affrc.go.jp/takezawa/r-tips/r/40.html
      
     
      
    
    
    
    
    
    
    
    
     
    
    
    
    
    
    
    
    
     
    
    
    
    
    
    
    
    
     
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
     Import Table format data
40. " " " " " cf. R-Tips: 40. 
       http://cse.naro.affrc.go.jp/takezawa/r-tips/r/40.html Import Table format data
41. " " " " " cf. R-Tips: 40. 
       http://cse.naro.affrc.go.jp/takezawa/r-tips/r/40.html Import Table format data
42. " " " " " cf. R-Tips: 40. 
       http://cse.naro.affrc.go.jp/takezawa/r-tips/r/40.html Import Table format data
43. " " " " " cf. R-Tips: 40. 
       http://cse.naro.affrc.go.jp/takezawa/r-tips/r/40.html Import Table format data
44. " " " " " cf. R-Tips: 40.   # $ http://cse.naro.affrc.go.jp/takezawa/r-tips/r/40.html Import Table format data # &_"# $
    # " # "/!  # %"
45. " " " " " cf. R-Tips: 40.   # $ http://cse.naro.affrc.go.jp/takezawa/r-tips/r/40.html Import Table format data # &_"# $
    # " # "/!  # %"
46. 67  
    1 @y__mattu https://github.com/ymattu/TokyoR67 Import Table format data
47.        
    
    
    
     
    
    ∖
    
           Import Table format data Wrap
48.   
     Import Table format data 
     Wrappers
49.   
     Import Table format data 
     Wrappers
50. Package … {utils} Package {base} Package
51. Package Package Package Package Package Package Package Package Package Package Package Package Package Package Package
52. packages 
    
53. cf. http://rpkg.gepuro.net/ cf. https://cran.r-project.org/web/packages/ at 2018.02.20
54. Package Default pkgs Package Package Package CRAN Guithub Package Package Package Package Package Package Package Package  
       
55.    
     Import Table format data Default installed pkg (optional) Function   
     Install REQUIRED
56. Import Table format data List of installed packages
57. Import Table format data        Installation (from CRAN)  
    
     Usage  
    
          or
58. Import Table format data Global environment # Attach {data.table}
59. Import Table format data        
        
      Fast!!! Flexible!!! Need installation Should specify: data.table =FALSE Automatic!!! Simple!!!
60.    
          
        object file path Export Table format data Wrapper
61. Input Output Today’s talk ? ? Table data Image data Other formats Summary Introduction
62. Image data Table data Image data Other formats Summary Introduction
63. Export image data ?
64. Export image data Use Graphic Device ready graphic device close graphic device draw graph(s) plotting functions
    High-level
    Low-level
    Interactive Basic Graphics in R http://bcb.dfci.harvard.edu/~aedin/courses/BiocDec2011/2.Plotting.pdf
65. Export image data Use Graphic Device ready close draw  
     
           High-level plotting function
66. hogehoge ~/Documents/R hogehoge.Rproj hoge.png New!!
67. Export image data Graphic Devices in
68. Export image data Graphic Devices in    
    
    
      
    
    
    
    
    
          
     
     
      
    
       
    
     
69. 
      ready graphic device close graphic device draw graph(s) Image data processing Import & Export image    
    
    
    
    
    
    
    
    
    
       
    
    
    
    
    
    
    
    
    
    
     processing
70.   Import image data      
    
71.   Import image data      
    
72.   Import image data     
       
        
73.   Import image data     
       
        
74. Import image data  
    
        
    
       Export image data  
    
        # not CRAN pkg  
    
       # low googlability !
75. Import image data  
    
        
    
       Export image data  
    
        # not CRAN pkg  
    
       # low googlability !
79. Salvador Dalí 1904-1989 profile of time wikipedia
80. http://seekr.jp/
83. Input Output Today’s talk ? ? Table data Image data Other formats Summary Introduction
84. Table data Image data Other formats Other formats Summary Introduction
85. .xls or .xlsx       
    
    
    
    
    
    
    
    
    
    
    
    GJMF
    QBUI  
    
    
    
    
    
    
    TIFFU
    OBNF
    PS
    /P
86. .json     Wrap  
       Wrap   
    
      
87.    .wav or .mp3         
    
88. .sas or .dta or .sav SAS Stata SPSS    
      
         
      
        
     
    
89. 
     Table data Image data Other formats Summary Introduction
90. Input Output Do NOT start from here Whatever … 1 2 3
91. Data Import / Export ? ?
92. packages 
    
93. Data Import / Export ? ?     
                       packages
94. ~/Documents/R project1 project2 project3 project4
95. Before After BeginneR Session
    
     ?
96. ! KMT©
97. KMT©