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Dash Cytoscapeで始めるネットワーク可視化 / plotly dash book

komo_fr
January 12, 2021

Dash Cytoscapeで始めるネットワーク可視化 / plotly dash book

komo_fr

January 12, 2021
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  1. %BTI$ZUPTDBQFͰ࢝ΊΔ
    ωοτϫʔΫՄࢹԽ
    1ZUIPOΠϯλϥΫςΟϒɾσʔλϏδϡΞϥΠθʔγϣϯೖ໳
    $07*%ͷσʔλΛ࢖ͬͨΠϯλϥΫςΟϒՄࢹԽࣄྫ

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  2. !LPNP@GS
    ࣗݾ঺հ
    2
    ‣ ݹ໦༑ࢠ
    ‣ 5XJUUFS!LPNP@GS
    ‣ 1ZUIPOΠϯλϥΫςΟϒɾσʔλϏδϡΞϥΠθʔγϣϯೖ໳
    ‣ %BTI$ZUPTDBQFؔ࿈ষʢ ষʣΛ୲౰
    ‣ ࢓ࣄ
    ‣ 1ZUIPOʹΑΔσʔλղੳɺιϑτ΢ΤΞ։ൃ
    ‣ גࣜձࣾϏʔϓϥ΢υ
    ‣ ౦ژେֶઌ୺Պֶٕज़ݚڀηϯλʔ
    ‣ ීஈͷۀ຿Ͱ΋QMPUMZΛ࢖͍ͬͯ·͢
    ‣ 1ZUIPOίϛϡχςΟʹ͓͚Δొஃྺ
    ‣ 1Z$PO+1 UBML

    ‣ &VSP1ZUIPO -5

    &VSP1ZUIPO!εΠε

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  3. !LPNP@GS
    1&1ؒͷҾ༻ؔ܎ωοτϫʔΫ
    3
    ࣮૷͸CPLFI

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  4. !LPNP@GS
    "HFOEB
    ‣ ωοτϫʔΫՄࢹԽͱ͸
    ‣ $07*%࿦จωοτϫʔΫͷྫɾσϞ
    ‣ ωοτϫʔΫՄࢹԽͷجຊ
    ‣ 1ZUIPOͰωοτϫʔΫՄࢹԽΛߦ͏ํ๏
    ‣ %BTI$UZUPTDBQFͷಛ௃ɾίʔυྫ
    ‣ ·ͱΊ
    4

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  5. !LPNP@GS
    ωοτϫʔΫՄࢹԽͱ͸
    ‣ ʮԿ͔ʯͱʮԿ͔ʯͷؔ܎ΛՄࢹԽ͢Δख๏ͷͻͱͭ
    ‣ σʔλͱσʔλͷؔ܎ʹண໨͢Δ͜ͱͰɺ
    σʔλ୯ମͷଐੑͰ͸Θ͔Βͳ͍ੑ࣭Λ୳Δ
    ‣ ྫ
    ‣ ࿦จͱ࿦จͷҾ༻ؔ܎
    ‣ ༑ਓؔ܎
    5
    ϊʔυ ϊʔυ
    Τοδ
    ۭखΫϥϒͷ
    ༑ਓؔ܎ωοτϫʔΫ
    ϊʔυ෦һ
    Τοδަ༑ؔ܎
    ৭ॴଐ೿ൊʢ෦௕೿ࢣൣ೿ʣ

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  6. !LPNP@GS
    ωοτϫʔΫσʔλͷྫ
    w IUUQOFUXPSLSFQPTJUPSZDPN
    6

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  7. !LPNP@GS
    $07*%ؔ࿈ͷ࿦จωοτϫʔΫ
    ‣ $03%ʢ$07*%0QFO3FTFBSDI%BUBTFU$IBMMFOHFʣ
    ‣ $07*%ؔ࿈࿦จΛͷτϐοΫʹ෼ྨ͠Ҿ༻ؔ܎Λදࣔ

    7
    ৭࿦จͷτϐοΫ
    ϊʔυαΠζඃҾ༻਺
    දࣔର৅ͱͳΔ
    ඃҾ༻਺ͷ࠷খ஋
    ެ։ઌͷδϟʔφϧ
    Τοδͷදࣔɾඇදࣔ
    ੾ସ
    IUUQTEBTIHBMMFSZQMPUMZIPTUEBTIDZUPTDBQFMEB

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  8. !LPNP@GS
    ωοτϫʔΫՄࢹԽͷجຊ
    ‣ ߏ੒ཁૉʢϊʔυͱΤοδʣ
    ‣ ʮԿͱԿ͕ؔ܎͋Δ͔ʯΛࣔ͢ߏ଄
    ‣ Կͷϊʔυ͕͋Δ͔ɺͲͷϊʔυಉ࢜ʹΤοδ͕ுΒΕ͍ͯΔ͔
    ‣ ελΠϧʢେ͖͞ɺ৭ɺܗঢ়ͳͲʣ
    ‣ ͨ͘͞Μͷ࿦จ͔ΒҾ༻͞Ε͍ͯͨΒେ͖͘͢Δ
    ‣ ࿦จͷΧςΰϦ͝ͱʹ৭Λม͑Δ
    ‣ Ҿ༻ճ਺͕ଟ͍΄ͲΤοδΛଠ͘͢Δ
    ‣ ϊʔυͷ഑ஔ
    ‣ ෺ཧతͳҐஔͱϊʔυͷ഑ஔΛҰகͤ͞Δ
    ‣ Ӻ΍ۭߓͷަ௨ωοτϫʔΫͳͲ
    ‣ ͹ͶྗֶΛ༻͍ͯɺࢹೝੑ͕ߴ͍Α͏ʹ഑ஔ͢Δ
    8

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  9. !LPNP@GS
    ωοτϫʔΫՄࢹԽΛΠϯλϥΫςΟϒʹߦ͏ར఺
    9
    ‣ ϊʔυͷ਺͕૿͑Δͱɺ੩ࢭըͰ͸ݶք͕͋Δ
    ‣ ϊʔυΛΫϦοΫͯ͠ɺྡ઀͢ΔϊʔυΛڧௐ͢Δ
    ‣ ϊʔυΛಈ͔ͯ͠ߏ଄Λ೺Ѳ͠΍͘͢͢Δ
    ‣ ֦େɾॖখͰશମͱ෦෼Λߦ͖དྷ͢Δ
    ‣ 6*Λ࢖ͬͯɺදࣔ͢Δϊʔυ΍
    ഑ஔɾελΠϧΛมߋ͢Δ
    ‣ ͳͲ
    ‣ ʮབྷ·ͬͨڊେͳໟۄʯ໰୊
    ‣ ϊʔυ͕ଟ͗ͯ͢
    Կͷ͜ͱ͔Θ͔Βͳ͍ঢ়ଶͷ
    ωοτϫʔΫ

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  10. !LPNP@GS
    1ZUIPOͰωοτϫʔΫՄࢹԽΛߦ͏ํ๏
    ‣ /FUXPSL9
    ‣ ωοτϫʔΫ෼ੳͷͨΊͷύοέʔδ
    ‣ ՄࢹԽ෦෼͸NBUQMPUMJCʹґଘʢ੩ࢭը૾ͷΈʣ
    ‣ %BTI$ZUPTDBQF
    ‣ %BTIͷ௥Ճίϯϙʔωϯτ
    ‣ $ZUPTDBQFKTʹґଘɻ$ZUPTDBQFKTͷػೳΛར༻Ͱ͖Δɻ༗޲άϥϑʹ΋ରԠɻ
    ‣ #PLFI
    ‣ ಠ࣮ࣗ૷ɻ༗޲άϥϑʹ͸ະରԠɻ/FUXPSL9ͱͷ࿈ܞ͕εϜʔζɻϗόʔʹΑΔৄࡉද͕ࣔՄɻ
    ‣ TUSFBNMJUBHSBQI
    ‣ 4USFBNMJUͷ௥Ճίϯϙʔωϯτ
    ‣ SFBDUEHSBQIʹґଘ
    ‣ ʹϦϦʔε͞Εɺ·ͩ৘ใ͕গͳ͍ʢ(JU)VCͷTUBS਺΋ʣ
    10
    ΠϯλϥΫςΟϒͳՄࢹԽ

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  11. !LPNP@GS
    %BTI$ZUPTDBQFͷಛ௃
    ‣ ωοτϫʔΫՄࢹԽΛߦ͏ͨΊͷ%BTIͷίϯϙʔωϯτ
    ‣ (JU)VCIUUQTHJUIVCDPNQMPUMZEBTIDZUPTDBQF
    ‣ $ZUPTDBQFKTͷϥούͰ͋ΔͨΊɺ$ZUPTDBQFKTͷػೳͷҰ෦
    ʢϊʔυͷ഑ஔΞϧΰϦζϜͳͲʣΛར༻Ͱ͖Δ
    ‣ $ZUPTDBQF
    ωοτϫʔΫͷ
    ՄࢹԽͱ෼ੳ͕
    ߦ͑Δ044ͷ
    ϓϥοτϑΥʔϜ
    11

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  12. !LPNP@GS
    %BTI$ZUPTDBQFͷجຊɾίʔυྫ
    ‣ QJQJOTUBMMEBTIDZUPTDBQF
    12
    ߏ੒ཁૉ
    ϊʔυͷ഑ஔ
    ελΠϧ
    ϊʔυͷఆٛ
    Τοδͷఆٛ
    ϊʔυશମʹର͢ΔελΠϧ
    ϊʔυ#ʹର͢ΔελΠϧ

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  13. !LPNP@GS
    ίʔϧόοΫͷར༻
    ‣ %BTIಉ༷ίʔϧόοΫΛ࢖ͬͯɺ
    ߏ੒ཁૉελΠϧ഑ஔΛมߋͰ͖Δ
    13

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  14. !LPNP@GS
    ·ͱΊ
    ‣ ωοτϫʔΫՄࢹԽͷجຊදݱʹ͍ͭͯ঺հ͠·ͨ͠
    ‣ ߏ੒ཁૉελΠϧϊʔυͷ഑ஔ
    ‣ 1ZUIPOͰ࢖༻Ͱ͖Δύοέʔδͱɺ
    %BTI$ZUPTDBQFͷಛ௃ɾجຊʹ͍ͭͯ঺հ͠·ͨ͠
    ‣ %BTI$ZUPTDBQFެࣜυΩϡϝϯτ
    ‣ IUUQTEBTIQMPUMZDPNDZUPTDBQF
    ‣ (JU)VC
    ‣ IUUQTHJUIVCDPNQMPUMZEBTIDZUPTDBQF
    14

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