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Computing Systems Seminar
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Alan Orth
December 05, 2013
Technology
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67
Computing Systems Seminar
Interview seminar for ILRI Computing Systems Analyst position.
Alan Orth
December 05, 2013
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Transcript
Designing research-computing systems that respond to the varying needs of
ILRI researchers Alan Orth ILRI, Kenya December 5, 2013
Research-computing platform Must be research agnostic and flexible to cater
to ILRI’s diverse disciplines
Diverse disciplines Genetics Statistics Geoinformatics Molecular Biology Immunology Breeding Ag
Economics Value Chains Bioinformatics Social Science Epidemiology Computer Science
Varying needs Sequence data Genome assembly Geospatial data Databases ILRI
films Phenotypic data System monitoring Mobile data collection Metagenomics pipelines Web servers
Wide scope Cows Zoonosis National partners Sheep Women Markets Baseline
surveys Increasing productivity Value chains Cassava
Support ILRI scientists and collaborators wherever they may be
Primary characteristics Computational capacity should be high and fast Data
should be accessible and safe
Provide a strong foundation for... Cutting-edge science supported by a
state- of-the-art infrastructure. Building a community of practice by teaching good habits and helping scientists use the tools. Breaking down silos and promoting collaboration via openness and sharing.
Standing on shoulders of giants
Embrace “open” Open-source software Open-access science
Building “next-gen” research computing Four years at ILRI ✓ Three
iterations of HPC ✓ Create homogenous cluster environment ✓
Alan at ILRI (2010 - 2013)