Efforts in the semantic standardization of orthology content

Transcript

1. Efforts  in  the  seman.c  standardiza.on   of  orthology  content     Jesualdo   T.   Fernández-­‐Breis,   Mari   Carmen   Legaz-­‐García   (Universidad  de  Murcia,  IMIB-­‐Arrixaca,  Spain)        Hirokazu  Chiba,  Ikuo  Uchiyama   (NaLonal  InsLtute  for  Basic  Biology,  Japan)       Biohackathon    2015  Symposium,  Nagasaki,  September  13th  
2. Phylogenetic concepts
3. The QfO 2013 meeting report
4. Working group activities Analysis  of   ontologies   Orthology   Ontology  (OO)   Mappings  from   in-­‐use  formats   to  OO   GeneraLon  of   RDF  datasets   SemanLc  Web   for  data  query   and  inferencing  
5. Achievements…so far   •  DraY  of  the  Orthology  Ontology   •  Standard  transformaLon  process  for  geZng  RDF/OWL  data   from  OrthoXML  databases   •  State  of  the  art  tooling   •  Engagement  of  the  Quest  for  Orthologs  community    
6. Goals for this Biohackathon •  Orthology  Ontology   –  DocumentaLon   –  Policy  for  idenLfiers   –  Revision  and  enhancement   •  Datasets   –  Scaling  up  tesLng   –  Single  repository  vs  Distributed  repositories   –  Interoperability  with  Uniprot   –  Quality  of  datasets    
7.   Thank  you  for  your  abenLon   QuesLons,  comments..   Jesualdo  Tomás  Fernández  Breis   Universidad  de  Murcia,  IMIB-­‐Arrixaca   jfernand@um.es   hbp://webs.um.es/jfernand