Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Publishing bird tracking data: Movebank, Zenodo...

Sponsored · Your Podcast. Everywhere. Effortlessly. Share. Educate. Inspire. Entertain. You do you. We'll handle the rest. →
Avatar for Peter Desmet Peter Desmet
January 28, 2020
Science
230
0

Publishing bird tracking data: Movebank, Zenodo & GBIF

Talk at the Next Generation Animal Tracking meeting in Antwerp, Belgium - January 28, 2020.

Avatar for Peter Desmet

Peter Desmet

January 28, 2020

More Decks by Peter Desmet

See All by Peter Desmet
How a camera trap data standard enabled an ecosystem of interoperable tools
Avatar for Peter Desmet peterdesmet
0
32
Introducing Wild Moves and Wild Album
Avatar for Peter Desmet peterdesmet
0
37
Frictionless Data 101: How to document and validate datasets or create community standards with the Data Package standard
Avatar for Peter Desmet peterdesmet
0
71
How we plan to publish 1,000 bio-logging datasets to GBIF and OBIS
Avatar for Peter Desmet peterdesmet
0
85
Global Biodiversity Information Facility (GBIF): Supporting policy through data
Avatar for Peter Desmet peterdesmet
0
140
How we developed a data exchange format: Lessons learned from Camtrap DP
Avatar for Peter Desmet peterdesmet
1
380
B-Cubed: Leveraging analysis-ready biodiversity datasets and cloud computing for timely and actionable biodiversity monitoring
Avatar for Peter Desmet peterdesmet
0
380
MOVE2GBIF: GPS-zendergegevens van dieren mobiliseren naar Movebank en GBIF
Avatar for Peter Desmet peterdesmet
0
260
Introduction to Camtrap DP: A frictionless data exchange format for camera trapping data
Avatar for Peter Desmet peterdesmet
1
770

Other Decks in Science

See All in Science
AI(人工知能)の過去・現在・未来 —AIは人間を超えるのか—
Avatar for Y-h. Taguchi tagtag
PRO
0
170
Cross-Media Technologies, Information Science and Human-Information Interaction
Avatar for Beat Signer signer
PRO
3
32k
KISHIMOTO Atsuo
Avatar for Genomethica genomethica
0
130
Accelerating operator Sinkhorn iteration with overrelaxation
Avatar for Tasuku Soma tasusu
0
300
【論文紹介】Is CLIP ideal? No. Can we fix it?Yes! 第65回 コンピュータビジョン勉強会＠関東
Avatar for Shun Makino shun6211
5
2.4k
Bリーグのショットデータを活用した得点期待値モデルの構築 / Construction of expected points model using shot data of B.LEAGUE
Avatar for konakalab konakalab
0
110
20260220 OpenIDファウンデーション・ジャパン ご紹介 / 20260220 OpenID Foundation Japan Intro
Avatar for OpenID Foundation Japan oidfj
0
310
Understanding CVP Waveforms: Interpretation and Clinical Implications in Anesthesiology
Avatar for Nakashima Takaya taka88
0
470
Accelerated Computing for Climate forecast
Avatar for Jeongkyu Shin inureyes
PRO
0
170
MATSUO Makiko
Avatar for Genomethica genomethica
0
130
水耕栽培を始める前に知っておきたい植物の科学
Avatar for 栽培設計室 grow_design_lab
0
140
「遂行理論の未来」（松島斉教授最終講義記念セッションの発表資料）
Avatar for Shunya Noda shunyanoda
0
860

Featured

See All Featured
DevOps and Value Stream Thinking: Enabling flow, efficiency and business value
Avatar for Helen Beal helenjbeal
1
170
The Illustrated Children's Guide to Kubernetes
Avatar for Chris Short chrisshort
51
52k
Fantastic passwords and where to find them - at NoRuKo
Avatar for Phil Nash philnash
52
3.7k
Building a Modern Day 
E-commerce SEO Strategy
Avatar for Aleyda Solis aleyda
45
9k
Principles of Awesome APIs and How to Build Them.
Avatar for Keavy McMinn keavy
128
17k
How To Speak Unicorn (iThemes Webinar)
Avatar for Michelle Schulp Hunt marktimemedia
1
440
Lightning Talk: Beautiful Slides for Beginners
Avatar for Ines Montani inesmontani
PRO
1
530
The Art of Programming - Codeland 2020
Avatar for Erika Heidi erikaheidi
57
14k
Data-driven link building: lessons from a $708K investment (BrightonSEO talk)
Avatar for Szymon Słowik szymonslowik
1
1k
The Invisible Side of Design
Avatar for Vitaly Friedman smashingmag
303
52k
Sam Torres - BigQuery for SEOs
Avatar for Tech SEO Connect techseoconnect
PRO
0
250
Money Talks: Using Revenue to Get Sh*t Done
Avatar for Nikki Halliwell nikkihalliwell
0
210

Transcript

  1. 28 January 2020, Antwerp Peter Desmet Publishing bird tracking data

    Movebank, Zenodo & GBIF

  2. Hi!

  3. Publishing to Movebank

  4. Manage data in UvA-BiTS

  5. Access data from UvA-BiTS

  6. Workflow Our database Custom format Our research group

  7. Workflow Our database Movebank Custom format Movebank attributes Our research

    group Movement ecology community

  8. Movebank.org

  9. Create a study on Movebank

  10. Upload data to Movebank

  11. Movebank attribute dictionary

  12. Transform data with SQL github.com/inbo/bird-tracking

  13. Extract data using R

  14. Tracking data in Movebank format

  15. Upload data to Movebank

  16. Data on Movebank

  17. Download from Movebank

  18. Interact with Movebank

  19. Manage data on Movebank

  20. Update data on Movebank

  21. Archiving data

  22. Workflow Our database Movebank Zenodo Custom format Movebank attributes Movebank

    attributes Our research group Movement ecology community Citable archive

  23. Movebank repository

  24. Zenodo https://doi.org/10.5281/zenodo.3540799

  25. Zenodo

  26. GBIF

  27. Global Biodiversity Information Facility (GBIF)

  28. Interoperable data

  29. Dataset on GBIF https://doi.org/10.15468/02omly

  30. Movebank to GBIF

  31. Workflow Our database Movebank Zenodo GBIF Custom format Movebank attributes

    Movebank attributes Darwin Core Our research group Movement ecology community Citable archive Biodiversity research community

  32. Thank you! Peter Desmet (2020) Publishing bird tracking data: Movebank,

    Zenodo & GBIF. Presentation. http://bit.ly/publishing-bird-tracking @oscibio Open science lab for biodiversity oscibio.inbo.be @peterdesmet