Lock in $30 Savings on PRO—Offer Ends Soon! ⏳

ROSIE: Automated Image Processing Infrastructure

Avatar for Scott Burns Scott Burns
June 06, 2012
Science
0
150

ROSIE: Automated Image Processing Infrastructure

I presented ROSIE at the 2012 VUIIS Retreat.

Avatar for Scott Burns

Scott Burns

June 06, 2012
Tweet

More Decks by Scott Burns

See All by Scott Burns
Learning From the Pros: Modern Data Management for Clinicians and Scientists
Avatar for Scott Burns sburns
1
47
Confident Asset Deployments with Webpack & Django
Avatar for Scott Burns sburns
0
1.3k
An Introduction to Channels
Avatar for Scott Burns sburns
0
240
Empathy-as-a-Service
Avatar for Scott Burns sburns
0
100
Improving Research With Advanced REDCap Interfaces
Avatar for Scott Burns sburns
1
690

Other Decks in Science

See All in Science
academist Prize 4期生 研究トーク延長戦！「美は世界を救う」っていうけど、どうやって？
Avatar for Jimpei jimpe_hitsuwari
0
460
baseballrによるMLBデータの抽出と階層ベイズモデルによる打率の推定 / TokyoR118
Avatar for 森下光之助 dropout009
2
640
機械学習 - SVM
Avatar for Y. Yamamoto trycycle
PRO
1
940
データベース08: 実体関連モデルとは?
Avatar for Y. Yamamoto trycycle
PRO
0
1k
防災デジタル分野での官民共創の取り組み (1)防災DX官民共創をどう進めるか
Avatar for Masakatsu Sugii ditccsugii
0
430
データベース10: 拡張実体関連モデル
Avatar for Y. Yamamoto trycycle
PRO
0
1k
Accelerating operator Sinkhorn iteration with overrelaxation
Avatar for Tasuku Soma tasusu
0
130
高校生就活へのDA導入の提案
Avatar for Shunya Noda shunyanoda
0
6.1k
データから見る勝敗の法則 / The principle of victory discovered by science (open lecture in NSSU)
Avatar for konakalab konakalab
1
250
【RSJ2025】PAMIQ Core: リアルタイム継続学習のための⾮同期推論・学習フレームワーク
Avatar for Geson Anko gesonanko
0
450
NASの容量不足のお悩み解決！災害対策も兼ねた「Wasabi Cloud NAS」はここがスゴイ
Avatar for Climb climbteam
1
280
【論文紹介】Is CLIP ideal? No. Can we fix it?Yes! 第65回 コンピュータビジョン勉強会＠関東
Avatar for Shun Makino shun6211
5
2.1k

Featured

See All Featured
The agentic SEO stack - context over prompts
Avatar for schlessera schlessera
0
550
Large-scale JavaScript Application Architecture
Avatar for Addy Osmani addyosmani
515
110k
Bridging the Design Gap: How Collaborative Modelling removes blockers to flow between stakeholders and teams @FastFlow conf
Avatar for Kenny Baas-Schwegler baasie
0
400
Measuring Dark Social's Impact On Conversion and Attribution
Avatar for Stephen Akadiri stephenakadiri
0
89
Scaling GitHub
Avatar for Zach Holman holman
464
140k
Exploring the Power of Turbo Streams & Action Cable | RailsConf2023
Avatar for Kevin Liebholz kevinliebholz
37
6.2k
The Director’s Chair: Orchestrating AI for Truly Effective Learning
Avatar for Mike Taylor tmiket
0
60
Information Architects: The Missing Link in Design Systems
Avatar for Michelle Chin soysaucechin
0
710
StorybookのUI Testing Handbookを読んだ
Avatar for Shingo Yamazaki zakiyama
31
6.5k
The Illustrated Guide to Node.js - THAT Conference 2024
Avatar for David Neal reverentgeek
0
210
Un-Boring Meetings
Avatar for Sebastian Deterding codingconduct
0
160
How to optimise 3,500 product descriptions for ecommerce in one day using ChatGPT
Avatar for Katarina Dahlin katarinadahlin
PRO
0
3.3k

Transcript

  1. ROSIE An Automated Image Processing Infrastructure Scott Burns Education and

    Brain Science Research Lab [email protected] Intro Why What Input Import Processing Web End

  2. Common Problems Raw Data > RA RA RA Acquisition Analysis

    Intro Why What Input Import Processing Web End

  3. Intro Why What Input Import Processing Web End

  4. REDCap Intro Why What Input Import Processing Web End

  5. Session Number Normal Session? Run # : Image Type Intro

    Why What Input Import Processing Web End

  6. Import Intro Why What Input Import Processing Web End

  7. Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What

    Input Import Processing Web End

  8. ACCRE Processing Intro Why What Input Import Processing Web End

  9. fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level

    scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP

  10. Structural T1: Freesurfer • Relatively simple (recon-all -s ...) •

    Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation

  11. Web Architecture Intro Why What Input Import Processing Web End

  12. Web App: Projects Intro Why What Input Import Processing Web

    End

  13. Web App: Subjects Intro Why What Input Import Processing Web

    End

  14. Web App: Logs Intro Why What Input Import Processing Web

    End

  15. Web App: Job Results Intro Why What Input Import Processing

    Web End

  16. Upcoming Features • Mining processed results for REDCap import •

    Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End

  17. Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl

    Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End

  18. Questions Intro Why What Input Import Processing Web End