Upgrade to Pro
— share decks privately, control downloads, hide ads and more …
Speaker Deck
Features
Speaker Deck
PRO
Sign in
Sign up for free
Search
Search
ROSIE: Automated Image Processing Infrastructure
Search
Scott Burns
June 06, 2012
Science
0
140
ROSIE: Automated Image Processing Infrastructure
I presented ROSIE at the 2012 VUIIS Retreat.
Scott Burns
June 06, 2012
Tweet
Share
More Decks by Scott Burns
See All by Scott Burns
Learning From the Pros: Modern Data Management for Clinicians and Scientists
sburns
1
41
Confident Asset Deployments with Webpack & Django
sburns
0
1.2k
An Introduction to Channels
sburns
0
240
Empathy-as-a-Service
sburns
0
98
Improving Research With Advanced REDCap Interfaces
sburns
1
650
Other Decks in Science
See All in Science
MoveItを使った産業用ロボット向け動作作成方法の紹介 / Introduction to creating motion for industrial robots using MoveIt
ry0_ka
0
510
Ignite の1年間の軌跡
ktombow
0
130
データベース01: データベースを使わない世界
trycycle
PRO
1
660
生成AI による論文執筆サポートの手引き(ワークショップ) / A guide to supporting dissertation writing with generative AI (workshop)
ks91
PRO
0
510
サイゼミ用因果推論
lw
1
7.3k
メール送信サーバの集約における透過型SMTP プロキシの定量評価 / Quantitative Evaluation of Transparent SMTP Proxy in Email Sending Server Aggregation
linyows
0
940
点群ライブラリPDALをGoogleColabにて実行する方法の紹介
kentaitakura
1
300
3次元点群を利用した植物の葉の自動セグメンテーションについて
kentaitakura
2
1.3k
Gemini Prompt Engineering: Practical Techniques for Tangible AI Outcomes
mfonobong
2
130
機械学習 - K-means & 階層的クラスタリング
trycycle
PRO
0
990
データベース05: SQL(2/3) 結合質問
trycycle
PRO
0
710
地質研究者が苦労しながら運用する情報公開システムの実例
naito2000
0
220
Featured
See All Featured
Become a Pro
speakerdeck
PRO
29
5.4k
Into the Great Unknown - MozCon
thekraken
40
1.9k
Performance Is Good for Brains [We Love Speed 2024]
tammyeverts
10
950
Designing for Performance
lara
610
69k
Why You Should Never Use an ORM
jnunemaker
PRO
58
9.4k
KATA
mclloyd
30
14k
A designer walks into a library…
pauljervisheath
207
24k
The Illustrated Children's Guide to Kubernetes
chrisshort
48
50k
GraphQLの誤解/rethinking-graphql
sonatard
71
11k
For a Future-Friendly Web
brad_frost
179
9.8k
Visualization
eitanlees
146
16k
How GitHub (no longer) Works
holman
314
140k
Transcript
ROSIE An Automated Image Processing Infrastructure Scott Burns Education and
Brain Science Research Lab
[email protected]
Intro Why What Input Import Processing Web End
Common Problems Raw Data > RA RA RA Acquisition Analysis
Intro Why What Input Import Processing Web End
Intro Why What Input Import Processing Web End
REDCap Intro Why What Input Import Processing Web End
Session Number Normal Session? Run # : Image Type Intro
Why What Input Import Processing Web End
Import Intro Why What Input Import Processing Web End
Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What
Input Import Processing Web End
ACCRE Processing Intro Why What Input Import Processing Web End
fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level
scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP
Structural T1: Freesurfer • Relatively simple (recon-all -s ...) •
Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation
Web Architecture Intro Why What Input Import Processing Web End
Web App: Projects Intro Why What Input Import Processing Web
End
Web App: Subjects Intro Why What Input Import Processing Web
End
Web App: Logs Intro Why What Input Import Processing Web
End
Web App: Job Results Intro Why What Input Import Processing
Web End
Upcoming Features • Mining processed results for REDCap import •
Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End
Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl
Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End
Questions Intro Why What Input Import Processing Web End