Upgrade to Pro
— share decks privately, control downloads, hide ads and more …
Speaker Deck
Features
Speaker Deck
PRO
Sign in
Sign up for free
Search
Search
ROSIE: Automated Image Processing Infrastructure
Search
Scott Burns
June 06, 2012
Science
0
150
ROSIE: Automated Image Processing Infrastructure
I presented ROSIE at the 2012 VUIIS Retreat.
Scott Burns
June 06, 2012
Tweet
Share
More Decks by Scott Burns
See All by Scott Burns
Learning From the Pros: Modern Data Management for Clinicians and Scientists
sburns
1
43
Confident Asset Deployments with Webpack & Django
sburns
0
1.3k
An Introduction to Channels
sburns
0
240
Empathy-as-a-Service
sburns
0
100
Improving Research With Advanced REDCap Interfaces
sburns
1
670
Other Decks in Science
See All in Science
実力評価性能を考慮した弓道高校生全国大会の大会制度設計の提案 / (konakalab presentation at MSS 2025.03)
konakalab
2
210
KH Coderチュートリアル(スライド版)
koichih
1
49k
データマイニング - コミュニティ発見
trycycle
PRO
0
160
【RSJ2025】PAMIQ Core: リアルタイム継続学習のための⾮同期推論・学習フレームワーク
gesonanko
0
190
Quelles valorisations des logiciels vers le monde socio-économique dans un contexte de Science Ouverte ?
bluehats
1
550
生成AIと学ぶPythonデータ分析再入門-Pythonによるクラスタリング・可視化をサクサク実施-
datascientistsociety
PRO
4
1.8k
データベース06: SQL (3/3) 副問い合わせ
trycycle
PRO
1
640
機械学習 - SVM
trycycle
PRO
1
910
風の力で振れ幅が大きくなる振り子!? 〜タコマナローズ橋はなぜ落ちたのか〜
syotasasaki593876
1
110
研究って何だっけ / What is Research?
ks91
PRO
1
140
MCMCのR-hatは分散分析である
moricup
0
470
05_山中真也_室蘭工業大学大学院工学研究科教授_だてプロの挑戦.pdf
sip3ristex
0
680
Featured
See All Featured
Designing Experiences People Love
moore
142
24k
StorybookのUI Testing Handbookを読んだ
zakiyama
31
6.2k
VelocityConf: Rendering Performance Case Studies
addyosmani
332
24k
What's in a price? How to price your products and services
michaelherold
246
12k
GraphQLとの向き合い方2022年版
quramy
49
14k
The Cult of Friendly URLs
andyhume
79
6.6k
The Art of Programming - Codeland 2020
erikaheidi
56
14k
Embracing the Ebb and Flow
colly
88
4.9k
XXLCSS - How to scale CSS and keep your sanity
sugarenia
249
1.3M
jQuery: Nuts, Bolts and Bling
dougneiner
65
7.9k
Bash Introduction
62gerente
615
210k
Distributed Sagas: A Protocol for Coordinating Microservices
caitiem20
333
22k
Transcript
ROSIE An Automated Image Processing Infrastructure Scott Burns Education and
Brain Science Research Lab
[email protected]
Intro Why What Input Import Processing Web End
Common Problems Raw Data > RA RA RA Acquisition Analysis
Intro Why What Input Import Processing Web End
Intro Why What Input Import Processing Web End
REDCap Intro Why What Input Import Processing Web End
Session Number Normal Session? Run # : Image Type Intro
Why What Input Import Processing Web End
Import Intro Why What Input Import Processing Web End
Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What
Input Import Processing Web End
ACCRE Processing Intro Why What Input Import Processing Web End
fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level
scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP
Structural T1: Freesurfer • Relatively simple (recon-all -s ...) •
Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation
Web Architecture Intro Why What Input Import Processing Web End
Web App: Projects Intro Why What Input Import Processing Web
End
Web App: Subjects Intro Why What Input Import Processing Web
End
Web App: Logs Intro Why What Input Import Processing Web
End
Web App: Job Results Intro Why What Input Import Processing
Web End
Upcoming Features • Mining processed results for REDCap import •
Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End
Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl
Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End
Questions Intro Why What Input Import Processing Web End