Upgrade to Pro
— share decks privately, control downloads, hide ads and more …
Speaker Deck
Features
Speaker Deck
PRO
Sign in
Sign up for free
Search
Search
ROSIE: Automated Image Processing Infrastructure
Search
Scott Burns
June 06, 2012
Science
0
140
ROSIE: Automated Image Processing Infrastructure
I presented ROSIE at the 2012 VUIIS Retreat.
Scott Burns
June 06, 2012
Tweet
Share
More Decks by Scott Burns
See All by Scott Burns
Learning From the Pros: Modern Data Management for Clinicians and Scientists
sburns
1
41
Confident Asset Deployments with Webpack & Django
sburns
0
1.2k
An Introduction to Channels
sburns
0
240
Empathy-as-a-Service
sburns
0
98
Improving Research With Advanced REDCap Interfaces
sburns
1
650
Other Decks in Science
See All in Science
ガウス過程回帰とベイズ最適化
nearme_tech
PRO
1
450
データベース10: 拡張実体関連モデル
trycycle
PRO
0
720
Design of three-dimensional binary manipulators for pick-and-place task avoiding obstacles (IECON2024)
konakalab
0
220
データベース11: 正規化(1/2) - 望ましくない関係スキーマ
trycycle
PRO
0
680
03_草原和博_広島大学大学院人間社会科学研究科教授_デジタル_シティズンシップシティで_新たな_学び__をつくる.pdf
sip3ristex
0
490
データベース04: SQL (1/3) 単純質問 & 集約演算
trycycle
PRO
0
870
生成検索エンジン最適化に関する研究の紹介
ynakano
2
1.1k
Gemini Prompt Engineering: Practical Techniques for Tangible AI Outcomes
mfonobong
2
130
Hakonwa-Quaternion
hiranabe
1
110
機械学習 - SVM
trycycle
PRO
1
850
テンソル分解による糖尿病の組織特異的遺伝子発現の統合解析を用いた関連疾患の予測
tagtag
2
200
Transport information Geometry: Current and Future II
lwc2017
0
160
Featured
See All Featured
The Art of Delivering Value - GDevCon NA Keynote
reverentgeek
15
1.5k
Bash Introduction
62gerente
613
210k
10 Git Anti Patterns You Should be Aware of
lemiorhan
PRO
656
60k
Fight the Zombie Pattern Library - RWD Summit 2016
marcelosomers
233
17k
Rebuilding a faster, lazier Slack
samanthasiow
82
9.1k
Sharpening the Axe: The Primacy of Toolmaking
bcantrill
44
2.4k
Done Done
chrislema
184
16k
Into the Great Unknown - MozCon
thekraken
40
1.9k
It's Worth the Effort
3n
185
28k
[RailsConf 2023] Rails as a piece of cake
palkan
55
5.7k
Testing 201, or: Great Expectations
jmmastey
43
7.6k
The Power of CSS Pseudo Elements
geoffreycrofte
77
5.9k
Transcript
ROSIE An Automated Image Processing Infrastructure Scott Burns Education and
Brain Science Research Lab
[email protected]
Intro Why What Input Import Processing Web End
Common Problems Raw Data > RA RA RA Acquisition Analysis
Intro Why What Input Import Processing Web End
Intro Why What Input Import Processing Web End
REDCap Intro Why What Input Import Processing Web End
Session Number Normal Session? Run # : Image Type Intro
Why What Input Import Processing Web End
Import Intro Why What Input Import Processing Web End
Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What
Input Import Processing Web End
ACCRE Processing Intro Why What Input Import Processing Web End
fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level
scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP
Structural T1: Freesurfer • Relatively simple (recon-all -s ...) •
Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation
Web Architecture Intro Why What Input Import Processing Web End
Web App: Projects Intro Why What Input Import Processing Web
End
Web App: Subjects Intro Why What Input Import Processing Web
End
Web App: Logs Intro Why What Input Import Processing Web
End
Web App: Job Results Intro Why What Input Import Processing
Web End
Upcoming Features • Mining processed results for REDCap import •
Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End
Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl
Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End
Questions Intro Why What Input Import Processing Web End