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ROSIE: Automated Image Processing Infrastructure
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Scott Burns
June 06, 2012
Science
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150
ROSIE: Automated Image Processing Infrastructure
I presented ROSIE at the 2012 VUIIS Retreat.
Scott Burns
June 06, 2012
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Transcript
ROSIE An Automated Image Processing Infrastructure Scott Burns Education and
Brain Science Research Lab
[email protected]
Intro Why What Input Import Processing Web End
Common Problems Raw Data > RA RA RA Acquisition Analysis
Intro Why What Input Import Processing Web End
Intro Why What Input Import Processing Web End
REDCap Intro Why What Input Import Processing Web End
Session Number Normal Session? Run # : Image Type Intro
Why What Input Import Processing Web End
Import Intro Why What Input Import Processing Web End
Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What
Input Import Processing Web End
ACCRE Processing Intro Why What Input Import Processing Web End
fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level
scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP
Structural T1: Freesurfer • Relatively simple (recon-all -s ...) •
Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation
Web Architecture Intro Why What Input Import Processing Web End
Web App: Projects Intro Why What Input Import Processing Web
End
Web App: Subjects Intro Why What Input Import Processing Web
End
Web App: Logs Intro Why What Input Import Processing Web
End
Web App: Job Results Intro Why What Input Import Processing
Web End
Upcoming Features • Mining processed results for REDCap import •
Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End
Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl
Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End
Questions Intro Why What Input Import Processing Web End