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Standardize experimental protocol description for reproducible science

Standardize experimental protocol description for reproducible science

Lightning Talk at NBDC/DBCLS Biohackathon 2017 at JST Science Plaza

Tazro Inutano Ohta

September 09, 2017

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  1. Standardize experimental protocol description for reproducible science Tazro Ohta @inutano

    Database Center for Life Science BioHackathon 2017 Symposium
  2. Experimental protocols for automation should be in a machine readable

    format without ambiguity executable by both machines and humans
  3. What we did #biohack14, #biohack15, #BLAH15, #biohack16, #BLAH16 Jean‑Luc, Alex,

    Olga, Erick, and me discussion and development of linked data model Protocols as Document Executable workflow Populating examples and use cases Collaboration with RBI, a company developing biological experiment automation robot Publication: Robotic crowd biology with Maholo LabDroids doi:10.1038/nbt.3758
  4. What we will do #biohack17 Brush up the model through

    populating examples Tranalation from existing protocols to linked data Human readable && Machine readable Write markdown, convert to linked data https://github.com/inutano/experimental‑protocols Biological sample to article figure in one click connect biological experiment to data analysis pipeline Common Workflow Language