Going Organic - Genomic sequencing in Elasticsearch
My presentation from Elasticsearch Boston, given at @hackreduce. It details my journey through a side project - the problems, the pitfalls and finally a locality sensitive hashing algorithm that saved the day.
Bucketed spans Chaos Game Representation w/ geohash Common Terms query Fuzzy query Synonym injection ... many hours of experiments FAILED Tuesday, August 13, 13
Random Projections 3) repeat for all trigrams MAQDQGEKENPMRELRIRKL .............................................. 0 CVV ......QDK QDK 1 Tuesday, August 13, 13
Random Projections 3) repeat for all trigrams MAQDQGEKENPMRELRIRKL .............................................. 0 ...........QED 1 ..........................MRE 1 CVV QED MRE ......QDK QDK 1 Tuesday, August 13, 13