MultiQC

Transcript

2. MultiQC - Python package - Integration of all qc/postprocessing results into one single report - Visualization across all samples - Submodules for each analysis —> extensible package (open source) - Different rendering templates depending on the project - Support for 22 common bioinformatics tools including aligners, processing tools and qc programs - Visualization based on highlight.js - Matplotlib in case of large dataset
3. A tool for mapping and performing quality control on Hi-C data A tool for quantifying the expression of transcripts using RNA-seq data methylation sequencing data quality assessment tool for MeDIP-seq and MRE-seq A package is aimed at predicting and estimating the complexity of a genomic sequencing library RNA-Seq Quality Control Package : PCR Bias, BC Bias, Sequencing saturation, mapped reads distribution, coverage uniformity …
4. pip install multiqc pip install git+https://github.com/ewels/MultiQC.git conda install -c bioconda multiqc MultiQC : Installation
5. multiqc . MultiQC : Usage
6. MultiQC : Usage quick demo http://multiqc.info/