Shipping Bioinformatics Applications

Intro slides of a long list of tutorials about CodersCrowd and Code Reviews, I will be talking about Git, Docker, Code Review, deployments, knowledge management ...

1. SHIPPING BIOINFORMATICS APPLICATIONS
2. SHIPPING BIOINFORMATICS APPLICATIONS The future of
3. SHIPPING BIOINFORMATICS APPLICATIONS The future of is here …
4. CODE TEST DEPLOY MAINTAIN everyone can ugly code works too When you code for yourself …
5. CODE TEST DEPLOY MAINTAIN When you code properly for yourself …
6. CODE TEST DEPLOY MAINTAIN When you code for people … Versioning
7. CODE TEST DEPLOY MAINTAIN
8. CODE TEST DEPLOY MAINTAIN
9. CODE TEST DEPLOY MAINTAIN dev prod
10. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN from here to here
11. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN from here to here There can be a lot of problems
12. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN from here to here There can be a lot of problems dependencies Portability Environment (python 2.7 for god’s sake) Reproducibility Readability
13. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN solution : ship the dev environment with the code
14. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN In a box … solution : ship the dev environment with the code
15. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN In a box … solution : ship the dev environment with the code No VM pleaaase !
16. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN
17. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN
18. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN .io an open source project to pack, ship and run any application as a lightweight container
19. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN an open source project to pack, ship and run any application as a lightweight container
20. CODE TEST DEPLOY MAINTAIN CODE TEST DEPLOY MAINTAIN an open source project to pack, ship and run any application as a lightweight container looks like Git docker pull <image-name> docker images docker run <image-name> <command> docker commit <image-id> docker push <image-id> docker ps docker logs docker diff <image1> <image2>
21. Who’s using it already ? 4 months since they launched
22. Who’s using it already ? for bioinformatics stuff …
23. Who’s using it already ? for bioinformatics stuff … AND ?
24. Docker Application : Development Environment for online code review and collaboration
25. Docker Application : Development Environment for online code review and collaboration hmmm .. in the browser
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30. Description ksjdh ksjhfs dfjhsd fskjsd Concept to Web application bio* libraries Generate knowledge Code review by final users Learn Gamification Networking
31. CODE TEST DEPLOY MAINTAIN Versioning .com
32. CODE TEST CROWDCODE DEPLOY MAINTAIN Versioning .com
33. Demo