Barriers for open practices? - Lack of interest/knowledge (supplemental rarely posted) - Low incentive/pressure - that may change! - Takes (huge) time and effort - Document data and code - Versioning code and maintaining - FOBS - Fear of being scooped? - Not valued/taught in our graduate programs
Open Plant Pathology (OPP) fosters a diverse community culture that values open, transparent and reproducible research using shared data and reusable software Vision and mission
By creating a social network with a welcoming and sharing scientific community openplantpathology.slack.com Expanding network Sharing knowledge Brainstorming Building capacity (Hopefully!) more transparent, reproducible, efficient and reliable Plant Pathology research Social Workspace 1.
#general #welcome #forum Outcome-oriented #teaching #r_package_development Subject-matter #epidemictheory #genomics #reproducibility Visit https://openplantpathology.org and click on: “Not part of our Slack? Sign up Here!” How to join? Check-in at the member directory database Join channels Create public/private channels 1 2 5 4 Introduce yourself ! 3 Join other channels
- join the conversation in #slack; - share your ideas! - ask a question or provide an answer; - propose workshops; - collaborate on a paper with others After joining
Previous activities ICPP2018 - Workshops ● Network Analysis in Plant Pathology ● Applications of Information Theory in Plant Disease Management: Theory and Practice ● Introduction to Multivariate Statistics Using R ● Population Genomics in R useR!2018 July 13, 2018 - Talk ● Establishing a community for supporting and fostering adoption of reproducible research using R IEW12 June 12, 2018 - Talk ● Open ideas, data and code sharing: epidemiologists should be in front!
Data availability - AH Sparks, (2019). Compendium of R code and data for 'What’s so Open About Plant Pathology?'. Accessed 24 Feb 2019. Online at https://doi.org/10.5281/zenodo.2575301 - https://github.com/openplantpathology/OPP.at.ANU/ - Sparks, A.H., Del Ponte, E.M., Everhart, S., Foster, Z.S.L., Grünwald, N., (2019). Compendium of R code and data for ‘Status and Best Practices for Reproducible Research In Plant Pathology’. Accessed 22 Feb 2019. Online at https://doi.org/10.5281/zenodo.1250665 - https://openplantpathology.github.io/Reproducibility_in_Plant_Pathology/