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Intro to Reproducible Research with Rmarkdown

dpastoor
October 22, 2014
Science
1
170

Intro to Reproducible Research with Rmarkdown

A brief introduction to Rmarkdown in the context of reproducible research.

Disclaimer: these are supplementary slides to introduce the topic before a mostly hands-on session. A followup blog post or presentation outlining the material itself will follow at somepoint and I will add a link here.

dpastoor

October 22, 2014
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Transcript

  1. Becoming a reporting! ninja with Rmarkdown! Devin Pastoor! Center for

    Translational Medicine! University of Maryland, School of Pharmacy!
  2. None
  3. None

  4. Efficiency!

  5. Accountability!

  6. Errors!

  7. None

  8. A Roadmap to Reproducibility! Raw Data! Data Processing! Data Analysis!

    Results! .Rmd /.Rnw report or presentation! Figures! Tables! Written Text! R Scripts! R Scripts! R Scripts!

  9. Raw Data! Data Processing! Data Analysis! Results! .Rmd /.Rnw report

    or presentation! Figures! Tables! Written Text! R Scripts! R Scripts! R Scripts! 1! 2! 3! A Roadmap for Today!

  10. Rmarkdown and Knitr!

  11. Knitr!

  12. Header! Code Chunk! Markdown! Markdown!

  13. 1! 2! 3! 4!

  14. None

  15. Raw Data! Data Processing! Data Analysis! Results! .Rmd /.Rnw report

    or presentation! Figures! Tables! Written Text! R Scripts! R Scripts! R Scripts! 1! 2! 3! A Roadmap for Today!
  16. None