Upgrade to Pro — share decks privately, control downloads, hide ads and more …
Sign up for free

Leighton Pritchard Phytothreats: WP4

Avatar for Forest Research Forest Research
April 21, 2016
Research
120
0

Leighton Pritchard Phytothreats: WP4

Predicting risk by analysis of Phytophthora genome evolution

Avatar for Forest Research

Forest Research

April 21, 2016

More Decks by Forest Research

See All by Forest Research
Manion spiral model
Avatar for Forest Research forestresearch
0
1.9k
Armillarria
Avatar for Forest Research forestresearch
0
370
Predisposition of trees
Avatar for Forest Research forestresearch
1
530
Grow wild
Avatar for Forest Research forestresearch
0
330
A Multifaceted Systems Approach Identifies Polymicrobial Cause of AOD Stem Necrosis
Avatar for Forest Research forestresearch
0
410
Sarah Green (Forest Research)
Avatar for Forest Research forestresearch
0
440
David Cook- Phytothreats: WP1
Avatar for Forest Research forestresearch
0
190
Mariella Marzano Phytothreats: WP2
Avatar for Forest Research forestresearch
0
170
Beth Purse, Dan Chapman Phytothreats: WP3
Avatar for Forest Research forestresearch
0
130

Other Decks in Research

See All in Research
[IR Reading 2026春 論文紹介] LLM-based Listwise Reranking under the Effect of Positional Bias (ECIR 2026) /IR-Reading-2026-Spring
Avatar for Kohei Shinden koheishinden
PRO
0
410
【中間報告】国会議員の立法・政策実務を支える環境を巡る現状と課題
Avatar for 株式会社PoliPoli/PoliPoli.Inc polipoli
0
580
Cross-Media Human-Information Interaction
Avatar for Beat Signer signer
PRO
0
230
[最先端NLP勉強会2026] Agentic Rubrics as Contextual Verifiers for SWE Agents
Avatar for Ryo Fujii rfujii
1
350
最先端NLP 2026 論文紹介: Wait, Wait, Wait... Why Do Reasoning Models Loop? / SNLP Paper Review: Wait, Wait, Wait... Why Do Reasoning Models Loop?
Avatar for tkng tkng
0
220
LINEヤフー データサイエンス Meetup「三井物産コモディティ予測チャレンジ」の舞台裏-AlpacaTechパート
Avatar for tomo gamella
1
660
人間中心の意思決定支援AI
Avatar for Yukino Baba yukinobaba
PRO
7
4k
重要だけど測れていないもの：高齢者ケアの見えない課題
Avatar for テオリア・テクノロジーズ theoriatec2024
0
510
Data Visualization Tools in the Age of AI
Avatar for Fritz Lekschas flekschas
0
200
[Fishers] DIVER OSINT CTF 2026 特化AIエージェントハーネスで挑戦するOSINT CTF
Avatar for Hiroshi Y (RabotniKuma) analokmaus
0
560
2026年版中小企業白書・小規模企業白書の概要
Avatar for Takashi Ozeki ozekinote
0
220
長時間動画QAにおけるマルチエージェント推論 ・SVAgent: Storyline-Guided Long Video Understanding via Cross-Modal Multi-Agent Collaboration
Avatar for 村川卓也 murakawatakuya
1
200

Featured

See All Featured
Jamie Indigo - Trashchat’s Guide to Black Boxes: Technical SEO Tactics for LLMs
Avatar for Tech SEO Connect techseoconnect
PRO
0
660
Mozcon NYC 2025: Stop Losing SEO Traffic
Avatar for Sam Torres samtorres
1
520
RailsConf 2023
Avatar for Aaron Patterson tenderlove
30
1.5k
No one is an island. Learnings from fostering a developers community.
Avatar for Antonio thoeni
21
3.8k
Leveraging Curiosity to Care for An Aging Population
Avatar for Cassini Nazir cassininazir
1
490
Optimising Largest Contentful Paint
Avatar for Harry Roberts csswizardry
37
3.9k
Documentation Writing (for coders)
Avatar for Carmen Chung carmenintech
77
5.5k
Paper Plane
Avatar for Katie Cordina Lindsey katiecoart
PRO
2
53k
AI: The stuff that nobody shows you
Avatar for John Nunemaker jnunemaker
PRO
9
980
Lightning talk: Run Django tests with GitHub Actions
Avatar for Sarah Abderemane sabderemane
0
250
Fight the Zombie Pattern Library - RWD Summit 2016
Avatar for Marcelo Somers marcelosomers
234
17k
Money Talks: Using Revenue to Get Sh*t Done
Avatar for Nikki Halliwell nikkihalliwell
0
490

Transcript

  1. 2016-04-21 THAPBI PHYTO-THREATS PUBLICLY-AVAILABLE PHYTOPHTHORA GENOME DATA

  2. SOURCES

  3. Taxonomy ID: 4783 66 Assemblies, 20 species 2 new assemblies

    since last meeting 118 BioProjects (each with >= 1 assembly) NCBI/RefSeq

  4. 10 Genome Portals (various versions) 4 projects: P. capsici, P.

    cinnamomi, P. ramorum, P. sojae (and an endornavirus…) Data also at NCBI JGI

  5. Short read archive 68 assembly datasets (some duplication/versioning) ENA

  6. (release 31 current) 14 genomes (duplication of NCBI) 1xP. infestans,

    1xP. kernoviae, 1xP. lateralis, 9xP. parasitica, 1xP. ramorum, 1xP. sojae Ensembl Compara All-vs-all synteny comparisons not available (also ) Ensembl Protists downloadable downloadable PhytoPath

  7. STATS

  8. None

  9. Assemblies variable 82 contigs - 250k contigs (median 4500) 36Mbp

    - 230Mbp total length (median 48Mbp)
  10. None
  11. None

  12. ANIM

  13. None