Upgrade to Pro
— share decks privately, control downloads, hide ads and more …
Speaker Deck
Features
Speaker Deck
PRO
Sign in
Sign up for free
Search
Search
Leighton Pritchard Phytothreats: WP4
Search
Forest Research
April 21, 2016
Research
0
76
Leighton Pritchard Phytothreats: WP4
Predicting risk by analysis of Phytophthora genome evolution
Forest Research
April 21, 2016
Tweet
Share
More Decks by Forest Research
See All by Forest Research
Manion spiral model
forestresearch
0
1.7k
Armillarria
forestresearch
0
320
Predisposition of trees
forestresearch
1
450
Grow wild
forestresearch
0
240
A Multifaceted Systems Approach Identifies Polymicrobial Cause of AOD Stem Necrosis
forestresearch
0
320
Sarah Green (Forest Research)
forestresearch
0
370
David Cook- Phytothreats: WP1
forestresearch
0
150
Mariella Marzano Phytothreats: WP2
forestresearch
0
130
Beth Purse, Dan Chapman Phytothreats: WP3
forestresearch
0
92
Other Decks in Research
See All in Research
論文紹介:Safety Alignment Should be Made More Than Just a Few Tokens Deep
kazutoshishinoda
0
100
ウェブ・ソーシャルメディア論文読み会 第31回: The rising entropy of English in the attention economy. (Commun Psychology, 2024)
hkefka385
1
110
VectorLLM: Human-like Extraction of Structured Building Contours via Multimodal LLMs
satai
4
360
J-RAGBench: 日本語RAGにおける Generator評価ベンチマークの構築
koki_itai
0
850
Remote sensing × Multi-modal meta survey
satai
4
520
単施設でできる臨床研究の考え方
shuntaros
0
3.1k
心理言語学の視点から再考する言語モデルの学習過程
chemical_tree
2
650
情報技術の社会実装に向けた応用と課題:ニュースメディアの事例から / appmech-jsce 2025
upura
0
240
令和最新技術で伝統掲示板を再構築: HonoX で作る型安全なスレッドフロート型掲示板 / かろっく@calloc134 - Hono Conference 2025
calloc134
0
380
HoliTracer:Holistic Vectorization of Geographic Objects from Large-Size Remote Sensing Imagery
satai
3
170
国際論文を出そう!ICRA / IROS / RA-L への論文投稿の心構えとノウハウ / RSJ2025 Luncheon Seminar
koide3
10
5.7k
言語モデルの地図:確率分布と情報幾何による類似性の可視化
shimosan
8
2k
Featured
See All Featured
For a Future-Friendly Web
brad_frost
180
10k
Done Done
chrislema
185
16k
Speed Design
sergeychernyshev
32
1.2k
Easily Structure & Communicate Ideas using Wireframe
afnizarnur
194
16k
Keith and Marios Guide to Fast Websites
keithpitt
411
23k
Templates, Plugins, & Blocks: Oh My! Creating the theme that thinks of everything
marktimemedia
31
2.6k
Building a Scalable Design System with Sketch
lauravandoore
463
33k
Making the Leap to Tech Lead
cromwellryan
135
9.6k
jQuery: Nuts, Bolts and Bling
dougneiner
65
7.9k
How To Stay Up To Date on Web Technology
chriscoyier
791
250k
実際に使うSQLの書き方 徹底解説 / pgcon21j-tutorial
soudai
PRO
190
55k
Evolution of real-time – Irina Nazarova, EuRuKo, 2024
irinanazarova
9
1k
Transcript
2016-04-21 THAPBI PHYTO-THREATS PUBLICLY-AVAILABLE PHYTOPHTHORA GENOME DATA
SOURCES
Taxonomy ID: 4783 66 Assemblies, 20 species 2 new assemblies
since last meeting 118 BioProjects (each with >= 1 assembly) NCBI/RefSeq
10 Genome Portals (various versions) 4 projects: P. capsici, P.
cinnamomi, P. ramorum, P. sojae (and an endornavirus…) Data also at NCBI JGI
Short read archive 68 assembly datasets (some duplication/versioning) ENA
(release 31 current) 14 genomes (duplication of NCBI) 1xP. infestans,
1xP. kernoviae, 1xP. lateralis, 9xP. parasitica, 1xP. ramorum, 1xP. sojae Ensembl Compara All-vs-all synteny comparisons not available (also ) Ensembl Protists downloadable downloadable PhytoPath
STATS
None
Assemblies variable 82 contigs - 250k contigs (median 4500) 36Mbp
- 230Mbp total length (median 48Mbp)
None
None
ANIM
None