Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Leighton Pritchard Phytothreats: WP4

Sponsored · Your Podcast. Everywhere. Effortlessly. Share. Educate. Inspire. Entertain. You do you. We'll handle the rest. →
Avatar for Forest Research Forest Research
April 21, 2016
Research
0
87

Leighton Pritchard Phytothreats: WP4

Predicting risk by analysis of Phytophthora genome evolution

Avatar for Forest Research

Forest Research

April 21, 2016
Tweet

More Decks by Forest Research

See All by Forest Research
Manion spiral model
Avatar for Forest Research forestresearch
0
1.7k
Armillarria
Avatar for Forest Research forestresearch
0
330
Predisposition of trees
Avatar for Forest Research forestresearch
1
470
Grow wild
Avatar for Forest Research forestresearch
0
250
A Multifaceted Systems Approach Identifies Polymicrobial Cause of AOD Stem Necrosis
Avatar for Forest Research forestresearch
0
330
Sarah Green (Forest Research)
Avatar for Forest Research forestresearch
0
380
David Cook- Phytothreats: WP1
Avatar for Forest Research forestresearch
0
160
Mariella Marzano Phytothreats: WP2
Avatar for Forest Research forestresearch
0
140
Beth Purse, Dan Chapman Phytothreats: WP3
Avatar for Forest Research forestresearch
0
110

Other Decks in Research

See All in Research
自動運転におけるデータ駆動型AIに対する安全性の考え方 / Safety Engineering for Data-Driven AI in Autonomous Driving Systems
Avatar for Fuyuki Ishikawa / 石川 冬樹 ishikawafyu
0
130
CoRL2025速報
Avatar for robotpaper.challenge rpc
4
4.2k
世界の人気アプリ100個を分析して見えたペイウォール設計の心得
Avatar for Akihiro Kokubo akihiro_kokubo
PRO
66
37k
教師あり学習と強化学習で作る 最強の数学特化LLM
Avatar for Hiroshi Y (RabotniKuma) analokmaus
2
890
一般道の交通量減少と速度低下についての全国分析と熊本市におけるケーススタディ（20251122 土木計画学研究発表会）
Avatar for Traffic Brain trafficbrain
0
160
製造業主導型経済からサービス経済化における中間層形成メカニズムのパラダイムシフト
Avatar for Masatake Yamoto yamotty
0
480
AIスパコン「さくらONE」の
オブザーバビリティ / Observability for AI Supercomputer SAKURAONE
Avatar for Yuuki Tsubouchi (yuuk1) yuukit
2
1.2k
2026-01-30-MandSL-textbook-jp-cos-lod
Avatar for Yuka Egusa yegusa
0
210
A History of Approximate Nearest Neighbor Search from an Applications Perspective
Avatar for Yusuke Matsui matsui_528
1
160
Attaques quantiques sur Bitcoin : comment se protéger ?
Avatar for Renaud Lifchitz rlifchitz
0
140
超高速データサイエンス
Avatar for Yusuke Matsui matsui_528
2
380
地域丸ごとデイサービス「Go トレ」の紹介
Avatar for SMARTふくしラボ smartfukushilab1
0
920

Featured

See All Featured
Side Projects
Avatar for Sacha Greif sachag
455
43k
Designing Dashboards & Data Visualisations in Web Apps
Avatar for Des Traynor destraynor
231
54k
Stop Working from a Prison Cell
Avatar for Chris Michel hatefulcrawdad
273
21k
For a Future-Friendly Web
Avatar for Brad Frost brad_frost
182
10k
Making Projects Easy
Avatar for Brett Harned brettharned
120
6.6k
10 Git Anti Patterns You Should be Aware of
Avatar for Lemi Orhan Ergin lemiorhan
PRO
659
61k
How Fast Is Fast Enough? [PerfNow 2025]
Avatar for Tammy Everts tammyeverts
3
450
コードの90%をAIが書く世界で何が待っているのか / What awaits us in a world where 90% of the code is written by AI
Avatar for r-kagaya rkaga
60
42k
Building the Perfect Custom Keyboard
Avatar for Naoto Takai takai
2
690
Chasing Engaging Ingredients in Design
Avatar for Sebastian Deterding codingconduct
0
110
GraphQLの誤解/rethinking-graphql
Avatar for sonatard sonatard
74
11k
Build your cross-platform service in a week with App Engine
Avatar for Jose L jlugia
234
18k

Transcript

  1. 2016-04-21 THAPBI PHYTO-THREATS PUBLICLY-AVAILABLE PHYTOPHTHORA GENOME DATA

  2. SOURCES

  3. Taxonomy ID: 4783 66 Assemblies, 20 species 2 new assemblies

    since last meeting 118 BioProjects (each with >= 1 assembly) NCBI/RefSeq

  4. 10 Genome Portals (various versions) 4 projects: P. capsici, P.

    cinnamomi, P. ramorum, P. sojae (and an endornavirus…) Data also at NCBI JGI

  5. Short read archive 68 assembly datasets (some duplication/versioning) ENA

  6. (release 31 current) 14 genomes (duplication of NCBI) 1xP. infestans,

    1xP. kernoviae, 1xP. lateralis, 9xP. parasitica, 1xP. ramorum, 1xP. sojae Ensembl Compara All-vs-all synteny comparisons not available (also ) Ensembl Protists downloadable downloadable PhytoPath

  7. STATS

  8. None

  9. Assemblies variable 82 contigs - 250k contigs (median 4500) 36Mbp

    - 230Mbp total length (median 48Mbp)
  10. None
  11. None

  12. ANIM

  13. None