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Developing Open Source in Service to National Security

C416a04a16b233e65afd993815c167dd?s=47 Ian Lee
September 14, 2016

Developing Open Source in Service to National Security

Ever wondered what software gets developed at a national laboratory? Thanks to the open source efforts of LLNL, you don't have to wonder any longer!

This talk will highlight the ongoing expansion of the open source community inside one Department of Energy research lab. These developers bring software and tools which support science and security, issues of national importance, into the open source community. The talk will also describe the unique challenge of bringing decades old software projects and historically closed source developers into the open source community for the first time.


Ian Lee

September 14, 2016


  1. LLNL-PRES-702741 This work was performed under the auspices of the

    U.S. Department of Energy by Lawrence Livermore National Laboratory under contract DE-AC52-07NA27344. Lawrence Livermore National Security, LLC Developing Open Source in Service to Na3onal Security GitHub Universe Ian Lee Lawrence Livermore Na5onal Laboratory September 14, 2016
  2. LLNL-PRES-702741 2 so9ware.llnl.gov

  3. LLNL-PRES-702741 3 so9ware.llnl.gov

  4. LLNL-PRES-702741 4 so9ware.llnl.gov https://upload.wikimedia.org/wikipedia/commons/a/a8/U.S._National_labs_map.jpg

  5. LLNL-PRES-702741 5 so9ware.llnl.gov http://www.ex-astris-scientia.org/articles/new_enterprise/enterprise-warpcore.jpg

  6. LLNL-PRES-702741 6 so9ware.llnl.gov https://pixabay.com/get/e833b10d2af4083ed1534705fb0938c9bd22ffd41db612439df7c17ba0/silos-1602209_1920.jpg

  7. LLNL-PRES-702741 7 so9ware.llnl.gov 1960s 1970s 1980s 1990s 2000s 2010s Pioneering

    simulations of particle tracking CDC 3600 CDC 7600 Ozone mixing models CRAY 1 ASCI Blue- Pacific Helping the medical community plan radiation treatment Unprecedented dislocation dynamics simulations BlueGene Breakthrough visualizations of mixing fluids Dynamics in three dimensions Global climate modeling Detailed predictions of ecosystems Petascale and exascale computing
  8. LLNL-PRES-702741 8 so9ware.llnl.gov §  3 out of 16 #1 systems

    over last 20 years Top500.org ASCI White Nov 2000 – Nov 2001 BlueGene/L Nov 2004 – Nov 2007 Sequoia June 2012 https://www.top500.org/resources/top-systems/
  9. LLNL-PRES-702741 9 so9ware.llnl.gov TOSS – Tri-Lab Opera3ng System So@ware § 

    Built on Red Hat Enterprise Linux —  Not an HPC distribu5on §  Adds LLNL developed addi5ons and patches to support HPC —  Low Latency Interconnect: Infiniband —  Parallel File System: Lustre —  Resource Manager: SLURM §  Work closely with open communi5es Components not in TOSS Supported Linux Commodity Hardware Platform Kernel, Infiniband, Message Passing Interface Batch Scheduler (MOAB) User Environment Lustre File Systems Compiler & Development Tools Resource Manager (SLURM) TOSS Components HPSS Hopper LLNL-PRES-550311 TOSS is a software stack for HPC – large, interconnected clusters!
  10. LLNL-PRES-702741 10 so9ware.llnl.gov §  Began as simple resource manager — 

    Now scalable to 1.6M+ cores (sequoia) §  Launch and manage parallel jobs —  Large, parallel jobs, o9en MPI §  Queuing and scheduling of jobs —  Much more work than resources hCp://slurm.schedmd.com http://www.ibm.com/developerworks/library/l-slurm-utility/figure3.gif
  11. LLNL-PRES-702741 11 so9ware.llnl.gov hCp://flux-framework.github.io §  Family of projects used to

    build site-customized resource management systems §  flux-core —  Implements the communica5on layer and lowest level services and interfaces §  flux-sched —  Consists of an engine that handles all the func5onality common to scheduling §  capacitor —  A bulk execu5on manager using flux-core, handles running and monitoring 1000’s of jobs
  12. LLNL-PRES-702741 12 so9ware.llnl.gov ZFS on Linux hCp://zfsonlinux.org §  ZFS is

    an open source filesystem and volume manager designed to address the limita5ons of exis5ng storage solu5ons §  2011: Available for Linux §  Ten LLNL filesystems, totaling ~ 100PB §  Ships in Ubuntu 16.04
  13. LLNL-PRES-702741 13 so9ware.llnl.gov §  Handles combinatorial explosion of ABI-incompa5ble packages

    §  All versions coexist, binaries work regardless of user’s environment §  Familiar syntax, reminiscent of brew, yum, etc ! ! ! $ spack install mpileaks unconstrained! $ spack install mpileaks@3.3 @ custom version! $ spack install mpileaks@3.3 %gcc@4.7.3 % custom compiler! $ spack install mpileaks@3.3 %gcc@4.7.3 +threads +/- build option! $ spack install mpileaks@3.3 os=SuSE11 os=<frontend OS>! $ spack install mpileaks@3.3 os=CNL10 os=<backend OS>! $ spack install mpileaks@3.3 os=CNL10 target=haswell target=<cpu target>! SPACK hCp://so@ware.llnl.gov/spack
  14. LLNL-PRES-702741 14 so9ware.llnl.gov §  Manages the first-ever decentralized database for

    handling climate science data §  Mul5ple petabytes of data at dozens of federated sites worldwide §  International collaboration for the software that powers most global climate change research hCps://github.com/ESGF hCp://esgf.llnl.gov
  15. LLNL-PRES-702741 15 so9ware.llnl.gov VisIt §  Originally developed to visualize and

    analyze the results of terascale simula5ons §  Interac5ve, scalable, visualiza5on, anima5on and analysis tool §  Powerful, easy to use GUI §  Distributed and parallel architecture allows handling extremely large data sets interac5vely hCp://visit.llnl.gov
  16. LLNL-PRES-702741 16 so9ware.llnl.gov hCp://computa3on.llnl.gov/casc

  17. LLNL-PRES-702741 17 so9ware.llnl.gov GitHub.com/LLNL – Repositories

  18. LLNL-PRES-702741 18 so9ware.llnl.gov GitHub.com/LLNL – Languages

  19. LLNL-PRES-702741 19 so9ware.llnl.gov GitHub.com/LLNL – Stargazers

  20. LLNL-PRES-702741 20 so9ware.llnl.gov So@ware.llnl.gov

  21. LLNL-PRES-702741 21 so9ware.llnl.gov §  “Federal Source Code Policy: Achieving Efficiency,

    Transparency, and Innova5on through Reuseable and Open Source So9ware” —  “Agencies shall make custom-developed code available for Government-wide reuse and make their code inventories discoverable at hmps://www.code.gov (“Code.gov”) […]” —  “[…] establishes a pilot program that requires agencies, when commissioning new custom so9ware, to release at least 20 percent of new custom-developed code as Open Source So9ware (OSS) […]” Federal Source Code Policy
  22. LLNL-PRES-702741 22 so9ware.llnl.gov US Government Organiza3ons on GitHub https://government.github.com/community/

  23. Thank You! @IanLee1521 // @LLNL_OpenSource ian@llnl.gov