Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Galaxy Community VM による NGSデータ解析

Avatar for Tazro Inutano Ohta Tazro Inutano Ohta
June 05, 2015
Research
1
160

Galaxy Community VM による NGSデータ解析

第13回 がんとハイポキシア研究会 http://www.cancer-hypoxia.org/13th_conference.htm

Avatar for Tazro Inutano Ohta

Tazro Inutano Ohta

June 05, 2015
Tweet

More Decks by Tazro Inutano Ohta

See All by Tazro Inutano Ohta
Yevis: System to support building a workflow registry with automated quality control
Avatar for Tazro Inutano Ohta inutano
0
120
Standardization of biological sample information database
Avatar for Tazro Inutano Ohta inutano
0
70
Describe data analysis workflow with workflow languages
Avatar for Tazro Inutano Ohta inutano
5
5.4k
Container virtualization technologies and workflow languages improve portability and reproducibility of data analysis environment
Avatar for Tazro Inutano Ohta inutano
3
340
次世代シーケンサーによるメタゲノム解析：桜の花びらに付着した環境DNAを解析する
Avatar for Tazro Inutano Ohta inutano
0
99
Workflows that run everywhere and where to run them
Avatar for Tazro Inutano Ohta inutano
0
160
The Sequence Read Archive search system to make use of public high-throughput sequencing data
Avatar for Tazro Inutano Ohta inutano
0
290
Improve portability of bioinformatics software across HPC and cloud infrastructures
Avatar for Tazro Inutano Ohta inutano
1
110
Container, Cloud, and HPC
Avatar for Tazro Inutano Ohta inutano
0
170

Other Decks in Research

See All in Research
20250725-bet-ai-day
Avatar for cipepser cipepser
2
370
近似動的計画入門
Avatar for MIKIO KUBO mickey_kubo
4
1k
引力・斥力を制御可能なランダム部分集合の確率分布
Avatar for Takahiro Kawashima wasyro
0
220
Cross-Media Information Spaces and Architectures
Avatar for Beat Signer signer
PRO
0
230
PhD Defense 2025: Visual Understanding of Human Hands in Interactions
Avatar for Take Ohkawa tkhkaeio
1
150
Creation and environmental applications of 15-year daily inundation and vegetation maps for Siberia by integrating satellite and meteorological datasets
Avatar for SatAI.challenge satai
3
190
SSII2025 [TS2] リモートセンシング画像処理の最前線
Avatar for 画像センシングシンポジウム ssii
PRO
7
3k
診断前の病歴テキストを対象としたLLMによるエンティティリンキング精度検証
Avatar for Takashi Nishibayashi hagino3000
1
120
集合間Bregmanダイバージェンスと置換不変NNによるその学習
Avatar for Takahiro Kawashima wasyro
0
130
AIによる画像認識技術の進化 -25年の技術変遷を振り返る-
Avatar for Hironobu Fujiyoshi hf149
7
3.9k
SkySense : A Multi-Modal Remote Sensing Foundation Model Towards Universal Interpretation for Earth Observation Imagery
Avatar for SatAI.challenge satai
3
300
心理言語学の視点から再考する言語モデルの学習過程
Avatar for Masato Mita chemical_tree
2
540

Featured

See All Featured
Balancing Empowerment & Direction
Avatar for Lara Hogan lara
2
570
Save Time (by Creating Custom Rails Generators)
Avatar for Garrett Dimon garrettdimon
PRO
32
1.4k
A better future with KSS
Avatar for Kyle Neath kneath
239
17k
Building Applications with DynamoDB
Avatar for Matt Wood mza
96
6.6k
Docker and Python
Avatar for Tania Allard trallard
45
3.5k
How to train your dragon (web standard)
Avatar for Monica Dinculescu notwaldorf
96
6.2k
Build The Right Thing And Hit Your Dates
Avatar for Maggie C. maggiecrowley
37
2.8k
Designing for Performance
Avatar for Lara Hogan lara
610
69k
Building Flexible Design Systems
Avatar for Yesenia Perez-Cruz yeseniaperezcruz
328
39k
Making Projects Easy
Avatar for Brett Harned brettharned
117
6.3k
Why Our Code Smells
Avatar for Brandon Keepers bkeepers
PRO
338
57k
Optimizing for Happiness
Avatar for Tom Preston-Werner mojombo
379
70k

Transcript

  1. Pitagora-Galaxy Project 2015 (BMBYZ$PNNVOJUZ7.ʹΑΔ /(4σʔλղੳ େాୡ࿠ ࢁதྒྷଠ ৘ใɾγεςϜݚڀػߏϥΠϑαΠΤϯε౷߹σʔλϕʔεηϯλʔ  ౦ژେֶઌ୺Պֶٕज़ݚڀηϯλʔ

    ͕ΜͱϋΠϙΩγΞݚڀձ

  2. Pitagora-Galaxy Project 2015 (BMBYZͱ͸ʁ (BMBYZ͸ɺແঈͰར༻Ͱ͖Δ౷߹σʔλղੳ؀ڥͰ͢ɻެ։͞Ε͍ͯΔιϑτ΢ΣΞ πʔϧ Λ૊Έ߹ΘͨղੳύΠϓϥΠϯͷߏஙɺ࣮ߦɺ࠶࣮ߦ΍݁Ռͷڞ༗͕؆୯ʹ ߦ͑ΔͨΊɺ/(4σʔλղੳʹ޿͘ར༻͞Ε͖࣮ͯͨ੷͕͋Γ·͢ 'JH 

    'JH (BMBYZͷΠϯλʔϑΣʔε 'JH (BMBYZ্ͰͷϫʔΫϑϩʔ

  3. Pitagora-Galaxy Project 2015 'JH XXXQJUBHPSBHBMBYZPSH 'JH ϐλΰϥɾΪϟϥΫγʔɾϓϩδΣΫτ (BMBYZ$PNNVOJUZ7. (BMBYZ$PNNVOJUZ+BQBO 1JUBHPSB(BMBYZ1SPKFDU

    ͸ɺ(BMBYZʹ͍ͭͯͷ৘ใڞ ༗ͷͨΊͷ΢ΣϒαΠτ XXXQJUBHPSBHBMBYZPSH Λ։ઃ͢Δͱڞʹɺ(BMBYZͱ ͦͷ্Ͱಈ࡞͢Δπʔϧ΍ϫʔΫϑϩʔΛઃఆࡁΈͷԾ૝؀ڥΛ഑෍͍ͯ͠·͢ɻҎ Լͷͭͷํ๏Ͱ͙͢ʹղੳϫʔΫϑϩʔΛ࣮ߦͰ͖·͢ɻ 'JH    ࣗ෼ͷ1$΍αʔόʔͰ࢖͑ΔԾ૝؀ڥ  ؆୯ͳղੳ͕Ͱ͖Δެ։ςετ༻αΠτ  Ϋϥ΢υͰىಈͰ͖ΔϚγϯΠϝʔδ

  4. Pitagora-Galaxy Project 2015 ಠࣗͷ֦ுػೳ 3FGFSFODF%PXOMPBE 'JH ͸ɺϦϑΝϨϯεσʔλ ྫ͑͹ɺ'"45"ήϊϜϑΝΠϧ΍ #8"ͷΠϯσοΫεϑΝΠϧ Λ؆୯ʹμ΢ϯϩʔυͰ͖ΔπʔϧͰ͢ɻ-PDBM'JMF

    #SPXTFS 'JH ͸ɺ(BMBYZ্ͰγʔέϯεσʔλϑΝΠϧΛ؅ཧͰ͖ΔπʔϧͰ͢ɻ֤ݚ ڀػؔͷطଘͷγʔέϯεσʔλΛݕࡧͯ͠(BMBYZʹΠϯϙʔτ͢Δ͜ͱ͕ग़དྷ·͢ɻ 'JH 3FGFSFODF%PXOMPBE 'JH -PDBM'JMF#SPXTFS

  5. Pitagora-Galaxy Project 2015 ৴པͰ͖ΔϫʔΫϑϩʔ (BMBYZ$PNNVOJUZ+BQBOʹ͸༷ʑͳେֶ΍ݚڀॴͷ(BMBYZϢʔβ͕ू·ΓɺͦΕͧ ΕͷݚڀࣨͰߏஙɾར༻͍ͯ͠ΔϫʔΫϑϩʔΛڞ༗͍ͯ͠·͢ɻͦΕͧΕͷϫʔΫ ϑϩʔʹ͍ͭͯͷৄࡉ͸XJLJ XJLJQJUBHPSBHBMBYZPSHXJLJ ʹ·ͱΊΒΕ͍ͯ·͢ɻ $PNNVOJUZ7.Λར༻͢Ε͹ɺ֤ݚڀࣨͰ࢖ΘΕ࣮ͨ੷ͷ͋ΔϫʔΫϑϩʔΛɺ͙͢

    ʹ࣮ߦ͢Δ͜ͱ͕Ͱ͖·͢ 'JH  ɻ 'JH ࢈૯ݚʹΑΔ#JTVMpUF4FRͷղੳϫʔΫϑϩʔ 'JH ཧݚʹΑΔ3/"4FRͷղੳϫʔΫϑϩʔ

  6. Pitagora-Galaxy Project 2015 কདྷల๬ ϐλΰϥΪϟϥΫγʔϓϩδΣΫτͰ ͸ɺ%PDLFSίϯςφΠϝʔδͷ࡞੒ ʹ΋औΓ૊ΜͰ͍·͢ɻ%PDLFSʹΑ Γɺ7.ΑΓ΋ߴ͍ύϑΥʔϚϯεͱɺ %PDLFSpMFʹΑΔ*OGSBTUSVDUVSFBT $PEFͷ࣮ݱʹΑΓɺσʔλղੳͷ࠶

    ݱੑΛ͞Βʹ޲্͢Δ͜ͱ͕Ͱ͖·͢ɻ কདྷతʹ͸ɺϢʔβχʔζʹ߹Θͤͨ ༷ʑͳܗͰͷԾ૝؀ڥͷ഑෍Λߦͬͯ ͍͖·͢ɻ