Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Large Scale Biological Data Science with Docker

Tazro Inutano Ohta
January 17, 2015
Science
4
30k

Large Scale Biological Data Science with Docker

Docker Meetup Tokyo #4 LT by @inutano

Tazro Inutano Ohta

January 17, 2015
Tweet

More Decks by Tazro Inutano Ohta

See All by Tazro Inutano Ohta
Yevis: System to support building a workflow registry with automated quality control
inutano
0
100
Standardization of biological sample information database
inutano
0
60
Describe data analysis workflow with workflow languages
inutano
5
4.8k
Container virtualization technologies and workflow languages improve portability and reproducibility of data analysis environment
inutano
3
330
次世代シーケンサーによるメタゲノム解析：桜の花びらに付着した環境DNAを解析する
inutano
0
79
Workflows that run everywhere and where to run them
inutano
0
140
The Sequence Read Archive search system to make use of public high-throughput sequencing data
inutano
0
260
Improve portability of bioinformatics software across HPC and cloud infrastructures
inutano
1
96
Container, Cloud, and HPC
inutano
0
150

Other Decks in Science

See All in Science
Reconciling Accuracy, Cost, and Latency of Inference Serving Systems
pjamshidi
0
120
創薬における機械学習技術について
kanojikajino
16
5k
事業会社における 機械学習・推薦システム技術の活用事例と必要な能力 / ml-recsys-in-layerx-wantedly-2024
yuya4
4
300
第61回コンピュータビジョン勉強会「BioCLIP: A Vision Foundation Model for the Tree of Life」
x_ttyszk
1
1.6k
局所保存性・相似変換対称性を満たす機械学習モデルによる数値流体力学
yellowshippo
1
180
butterfly_effect/butterfly_effect_in-house
florets1
1
150
私たちのプロダクトにとってのよいテスト/good test for our products
camel_404
0
250
Improving Search @scale with efficient query experimentation @BerlinBuzzwords 2024
searchhub
0
270
02_西村訓弘_プログラムディレクター_人口減少を機にひらく未来社会.pdf
sip3ristex
0
180
Spectral Sparsification of Hypergraphs
tasusu
0
250
メール送信サーバの集約における透過型SMTP プロキシの定量評価 / Quantitative Evaluation of Transparent SMTP Proxy in Email Sending Server Aggregation
linyows
0
690
LIMEを用いた判断根拠の可視化
kentaitakura
0
440

Featured

See All Featured
Building a Scalable Design System with Sketch
lauravandoore
461
33k
The World Runs on Bad Software
bkeepers
PRO
67
11k
[Rails World 2023 - Day 1 Closing Keynote] - The Magic of Rails
eileencodes
33
2.1k
Bootstrapping a Software Product
garrettdimon
PRO
307
110k
Producing Creativity
orderedlist
PRO
344
40k
Become a Pro
speakerdeck
PRO
26
5.2k
The Psychology of Web Performance [Beyond Tellerrand 2023]
tammyeverts
46
2.4k
Side Projects
sachag
452
42k
Java REST API Framework Comparison - PWX 2021
mraible
29
8.4k
Visualization
eitanlees
146
15k
Practical Tips for Bootstrapping Information Extraction Pipelines
honnibal
PRO
13
1k
[RailsConf 2023 Opening Keynote] The Magic of Rails
eileencodes
28
9.3k

Transcript

  1. Large Scale Biological Data Science with Docker ڞ༻εύίϯ্Ͱσʔλղੳ XJUI%PDLFS Tazro

    Inutano Ohta twitter.com/iNut github.com/inutano

  2. )&-1

  3. ΍͍ͬͯΔ͜ͱ ܭଌػث͕ େྔʹσʔλΛग़͢ 044Λ૊Έ߹Θͤͯ ϫʔΫϑϩʔΛ࡞Δ ڞ༻ܭࢉػͷ্Ͱ ΨϯΨϯճ͢

  4. ࠔ͍ͬͯΔ͜ͱ ਺ϲ݄ʙ೥Ͱ σʔλͷੑ࣭͕มΘΔ ιϑτ΢ΣΞͱ ϫʔΫϑϩʔΛ ॊೈʹมߋ͍ͨ͠ ؀ڥߏஙͩΔ͍

  5. Apache Mesos Scheduler Node Node Node Node Node 16#-*$-0$"- %0$,&33&(*453:

    %PDLFSGJMFT XPSLGMPXDPOGJH      ׬੒༧૝ਤ

  6. Thank You! twitter.com/iNut github.com/inutano