Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Large Scale Biological Data Science with Docker

Avatar for Tazro Inutano Ohta Tazro Inutano Ohta
January 17, 2015
Science
4
30k

Large Scale Biological Data Science with Docker

Docker Meetup Tokyo #4 LT by @inutano

Avatar for Tazro Inutano Ohta

Tazro Inutano Ohta

January 17, 2015
Tweet

More Decks by Tazro Inutano Ohta

See All by Tazro Inutano Ohta
Yevis: System to support building a workflow registry with automated quality control
Avatar for Tazro Inutano Ohta inutano
0
120
Standardization of biological sample information database
Avatar for Tazro Inutano Ohta inutano
0
75
Describe data analysis workflow with workflow languages
Avatar for Tazro Inutano Ohta inutano
5
5.5k
Container virtualization technologies and workflow languages improve portability and reproducibility of data analysis environment
Avatar for Tazro Inutano Ohta inutano
3
340
次世代シーケンサーによるメタゲノム解析：桜の花びらに付着した環境DNAを解析する
Avatar for Tazro Inutano Ohta inutano
0
100
Workflows that run everywhere and where to run them
Avatar for Tazro Inutano Ohta inutano
0
160
The Sequence Read Archive search system to make use of public high-throughput sequencing data
Avatar for Tazro Inutano Ohta inutano
0
290
Improve portability of bioinformatics software across HPC and cloud infrastructures
Avatar for Tazro Inutano Ohta inutano
1
110
Container, Cloud, and HPC
Avatar for Tazro Inutano Ohta inutano
0
170

Other Decks in Science

See All in Science
「美は世界を救う」を心理学で実証したい～クラファンを通じた新しい研究方法
Avatar for Jimpei jimpe_hitsuwari
1
170
風の力で振れ幅が大きくなる振り子！？　〜タコマナローズ橋はなぜ落ちたのか〜
Avatar for Syota-Sasaki syotasasaki593876
1
110
データベース04: SQL (1/3) 単純質問 & 集約演算
Avatar for Y. Yamamoto trycycle
PRO
0
1k
My Little Monster
Avatar for Juzi juzishuu
0
130
【RSJ2025】PAMIQ Core: リアルタイム継続学習のための⾮同期推論・学習フレームワーク
Avatar for Geson Anko gesonanko
0
180
生成検索エンジン最適化に関する研究の紹介
Avatar for Yu Nakano / 中野優 ynakano
2
1.4k
Celebrate UTIG: Staff and Student Awards 2025
Avatar for University of Texas Institute for Geophysics utig
0
260
Accelerated Computing for Climate forecast
Avatar for Jeongkyu Shin inureyes
0
120
知能とはなにかーヒトとAIのあいだー
Avatar for Y-h. Taguchi tagtag
0
100
データマイニング - グラフ構造の諸指標
Avatar for Y. Yamamoto trycycle
PRO
0
200
DMMにおけるABテスト検証設計の工夫
Avatar for ishimura-ryota xc6da
1
1.1k
デジタルアーカイブの教育利用促進を目指したメタデータLOD基盤に関する研究 / Research on a Metadata LOD Platform for Promoting Educational Uses of Digital Archives
Avatar for Masao Takaku masao
0
100

Featured

See All Featured
Dealing with People You Can't Stand - Big Design 2015
Avatar for Cassini Nazir cassininazir
367
27k
Writing Fast Ruby
Avatar for Erik Berlin sferik
629
62k
[RailsConf 2023] Rails as a piece of cake
Avatar for Vladimir Dementyev palkan
57
5.9k
Principles of Awesome APIs and How to Build Them.
Avatar for Keavy McMinn keavy
127
17k
Code Reviewing Like a Champion
Avatar for maltzj maltzj
526
40k
Practical Tips for Bootstrapping Information Extraction Pipelines
Avatar for Matthew Honnibal honnibal
PRO
23
1.5k
Building Better People: How to give real-time feedback that sticks.
Avatar for Will Jessup wjessup
369
20k
Optimizing for Happiness
Avatar for Tom Preston-Werner mojombo
379
70k
No one is an island. Learnings from fostering a developers community.
Avatar for Antonio thoeni
21
3.5k
GraphQLとの向き合い方2022年版
Avatar for Yosuke Kurami quramy
49
14k
Optimising Largest Contentful Paint
Avatar for Harry Roberts csswizardry
37
3.5k
Become a Pro
Avatar for Speaker Deck speakerdeck
PRO
29
5.6k

Transcript

  1. Large Scale Biological Data Science with Docker ڞ༻εύίϯ্Ͱσʔλղੳ XJUI%PDLFS Tazro

    Inutano Ohta twitter.com/iNut github.com/inutano

  2. )&-1

  3. ΍͍ͬͯΔ͜ͱ ܭଌػث͕ େྔʹσʔλΛग़͢ 044Λ૊Έ߹Θͤͯ ϫʔΫϑϩʔΛ࡞Δ ڞ༻ܭࢉػͷ্Ͱ ΨϯΨϯճ͢

  4. ࠔ͍ͬͯΔ͜ͱ ਺ϲ݄ʙ೥Ͱ σʔλͷੑ࣭͕มΘΔ ιϑτ΢ΣΞͱ ϫʔΫϑϩʔΛ ॊೈʹมߋ͍ͨ͠ ؀ڥߏஙͩΔ͍

  5. Apache Mesos Scheduler Node Node Node Node Node 16#-*$-0$"- %0$,&33&(*453:

    %PDLFSGJMFT XPSLGMPXDPOGJH      ׬੒༧૝ਤ

  6. Thank You! twitter.com/iNut github.com/inutano