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Ka-Kyung Kim
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Ka-Kyung Kim
August 30, 2014
Programming
3
740
Ka-Kyung Kim
PyCon.KR
Lightning Talk
IPython으로 상호적, 재현 가능한 생물정보학 연구하기
Ka-Kyung Kim
August 30, 2014
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Transcript
Ka-Kyung Kim IPythonਵ۽ ࢚ഐ, അ оמೠ! ࢤޛࠁ োҳೞӝ 2014.08.30 ӣо҃
Ka-Kyung Kim PyCon.KR 2014 Lightning Talk • 1960 ֙: ҅
ࢤޛ فؼ ޖ۵ ؘఠ ࣁח ওਵݴ, ױߔ ࢲৌ ࣻসਸ ా೧ Dayho بхਵ۽ ੋࣧػ റ റ CD-ROMী ߓನغ. • 1990 ֙: ࢤޛࠁبٜ ৈ۞ ৬ ࣁӐ ѱ֧ਸ ನೣ ؊ ؘఠ ࣁܳ ࠙ࢳೞח झۨ٘ द ۽Ӓ۔җ җੋ ࣗਝয ಁఃܳ ࢎਊ ೣ. • 2003 ֙: ੋр ѱ֧ ৡۄੋ ҕѐ৬ ೣԋ ѱ֧ दо ઙܐؽ. Ҵ Ҵ݀ ࠁѤਗ (NIH) द௫य ҙ۲ ࢤޛী ਵ۽ ైೞৈ ࢳী بਸ ષ. • 2000 ֙ ߈ : Sanger द௫य ࡅܰҊ ۴ೠ ରࣁ द௫य ӝࣿী ೧ غয ࣻୌীࢲ ѱ֧ ࠁܳ ݻ दрীࢲ ࣻੌਸ ా೧ оמೞѱ ೣ. ࢤػ ࠻ ؘఠী ೧ࢲ زച ߂ ഛࢿ ਊೠ ҅ بҳܳ ѐߊ. • ې: 1,000׳۞ ѱ֧ दо о১ী ٮۄ, ѐੋ ѱ֧ী ೧ ҕҕ ؘఠ߬झо ߧۈ ೡ Ѫݴ, নೠ بҳ৬ ೣԋ ࠙ࢳ ೡ ࣻח ೂࠗೠ ࠁ ࣗझܳ ઁҕ ೡ Ѫ. ژೠ, ױ ߔ, ࢎ, ܐ , ജ҃ ઑѤ ؘఠ ాਸ ਤ೧ औѱ ࢎਊؼ ࣻ . 1 ѱ֧ दী ࢤޛࠁ োҳ ਃࢿ ف
Ka-Kyung Kim PyCon.KR 2014 Lightning Talk • ਃࢿ: ؘఠ ࠙ࢳ
ಿਸ ബਯਵ۽ ઁযೞҊ, ҕز সਸ ਊೞѱ ೞ ݴ, য۰ җઁ ѐߊ ۽Ӓ۔ ߂ ۄੋਸ ӝਵ۽ ਬ. زਸ ੜ ೞ Ҋ, ੍ӝ एݴ పझ ೞӝ ए ۽Ӓې߁ ߑߨ ਃೣ. • : ী۞о ࣘਵ۽ ߊѼغҊ ࣻؼ ࣻ ਵݴ, पपীࢲ Ѩૐਸ ਊೞ ب۾ ೣ. • IPython: Python, shell ݺ۸য, Rਸ ਗೞݴ, ࢲ۽ ܲ ۽Ӓ۔җ ۖಬ ਸ ాೞҊ ࠂೠ ࠙ࢳਸ ࠗఠ ө ࣻ೯ೞѱ ೞח ജ҃ਸ ਤೠ ࢚ഐ ஹೊ ജ҃ 2 അ оמೠ ࢤޛ ࠁ بҳ
Ka-Kyung Kim PyCon.KR 2014 Lightning Talk • 2011֙ Fernando Perzо
IPython ۽ંܳ दೣ. • ചഋ ஹೊҗ ࣗਝয ѐߊਸ ਤ೧ ୭ ࢤࢿਸ ب۾ ࢸ҅غਵݴ ୭Ӕ җ҅ਊ ॆ ۽Ӓ۔ ীࢲب ݒ ਃೠ بҳ. • 'ಞ-ஹੌ-प೯' ߑधࠁ 'प೯-ఐ࢝' ߑधਸ ۰ೣ. ؘఠ ఐ࢝, प, য়ܨ ౸ة, ߈ࠂ, ۄ ఠ ୭ച ١ਸ ࡅܰѱ ܻೡ ࣻ . • ઁ ऌ, ੌ दझమҗب ੜ ాغয ਵݴ, ܲ ۽Ӓې߁ যܳ ࢲನ ೣ (rmagic plugin, RPy2 library). • IPython notebook ֢࠘җ ۽Ӓې߁ ജ҃ਸ ాೞৈ, п ױ҅ীࢲ Ѿҗܳ ࠁҊ दпച ೞҊ ೡ ࣻ ਵݴ, ֢৬ ݭܳ ࢚ഐਵ۽ о оמೞݴ ܼ ೞա۽ ۄੋਸ प೯ೡ ࣻ . • ٮۄࢲ ࢤޛࠁ ࠙ࢳ ࢤࢿਸ ೱ࢚दఃҊ അࢿਸ ذח. ! • See details at http://nbviewer.ipython.org/gist/irobii/014b8aa3574090a0d04a 3 IPython notebook
Ka-Kyung Kim PyCon.KR 2014 Lightning Talk • Pythonਸ ਊೠ ࢤޛࠁ
झఠ٣! o Python Korea ਗ! o ҳࢿਗ: BT, IT, Designer, बܻ, Ҵޙ (ରܳ ইח৬ ೞח ৬ ݅թ) o ܐ: http://biopy.github.io http:// www.biopython.net ! • ߄য়झ ழޭפ౭ ߧ! o ߄য় + ֱҗী ҙब ח, पणഋ झఠ٣ ழޭפ౭! o ழޭפ౭: https://www.facebook.com/ groups/biospin/ o ಕ: https://www.facebook.com/ biospintalk 4 BioPython study
Ka-Kyung Kim PyCon.KR 2014 Lightning Talk • Cumulative histogram: ݃۽
RNA ఋѶ ࢎ ਬഋী ٮܲ mRNA ߊഅ ಁ ఢਸ Kolmogorov–Smirnov (KS) పझ৬ ־ ࠺ਯ۽ بधച ೠ ! • ҳഅ: http://nbviewer.ipython.org/gist/irobii/8e96a4834dc6993a25e2 ! • ߑߨ: Ipython notebookীࢲ दпചܳ ਤ೧ matplot library৬ җ ো оמ ೠ scipy ks_2samp ӝמਸ ࢎਊ ! • Ѿۿ: ӝઓ ুࣄীࢲ সਸ زച ೡ ࣻ ਵݴ, IPython notebook ղীࢲ Ѿҗ чਸ ഛੋೞҊ दпചо оמೣ. 5 ࢚ഐ, അ оמೠ ࢤޛ ࠁ োҳ
Ka-Kyung Kim хࢎפ email:
[email protected]