Ka-Kyung Kim

PyCon.KR
Lightning Talk
IPython으로 상호적, 재현 가능한 생물정보학 연구하기

Transcript

1. Ka-Kyung Kim
   IPythonਵ۽ ࢚ഐ੸, ੤അ оמೠ!
   ࢤޛ੿ࠁ೟ োҳೞӝ
   2014.08.30
   ӣо҃
   

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2. Ka-Kyung Kim
   PyCon.KR 2014 Lightning Talk
   ● 1960 ֙؀: ҅࢑ ࢤޛ೟੉ ؀فؼ ޖ۵ ؘ੉ఠ ࣁ౟ח ੘ওਵݴ, ױߔ૕ ࢲৌ਷ ࣻ੘সਸ
   ా೧ Dayho بхਵ۽ ੋࣧػ റ ੉റ CD-ROMী ߓನغ঻਺.
   ● 1990 ֙؀: ࢤޛ੿ࠁ೟بٜ੉ ৈ۞ ౵૑৬ ࣁӐ੄ ѱ֧ਸ ನೣ ੼੼ ؊ ௾ ؘ੉ఠ ࣁ౟ܳ
   ࠙ࢳೞח झ೐ۨ٘ द౟ ೐۽Ӓ۔җ җ೟੸ੋ ࣗ೐౟ਝয ಁః૑ܳ ࢎਊ ೣ.
   ● 2003 ֙: ੋр ѱ֧੄ ৡۄੋ ҕѐ৬ ೣԋ ੹ ѱ֧ द؀о ઙܐؽ. ޷Ҵ Ҵ݀ ࠁѤਗ
   (NIH) द௫य ҙ۲ ࢤޛী ૘઺੸ਵ۽ ై੗ೞৈ ઱ࢳী ب਑ਸ ષ.
   ● 2000 ֙؀ ઺߈ : Sanger द௫य਷ ࡅܰҊ ੷۴ೠ ରࣁ؀ द௫य ӝࣿী ੄೧ ؀୓غয
   ࣻୌীࢲ ੹୓ ѱ֧੄ ੿ࠁܳ ݻ दрীࢲ ࣻੌਸ ా೧ оמೞѱ ೣ. ࢤ࢑ػ ࠻ ؘ੉ఠী
   ؀೧ࢲ ੗زച ߂ ഛ੢ࢿ੉ ਊ੉ೠ ҅࢑ بҳܳ ѐߊ઺੐.
   ● ޷ې: 1,000׳۞ ѱ֧ द؀о ׮о১ী ٮۄ, ѐੋ ѱ֧ী ؀೧ ҕҕ ؘ੉ఠ߬੉झо ߧۈ
   ೡ Ѫ੉ݴ, ׮নೠ بҳ৬ ೣԋ ࠙ࢳ ೡ ࣻ੓ח ೂࠗೠ ੿ࠁ ࣗझܳ ઁҕ ೡ Ѫ੐. ژೠ, ױ
   ߔ૕୓೟, ؀ࢎ୓೟, ੄ܐ ੉޷૚, ജ҃ ઑѤ ؘ੉ఠ੄ ా೤ਸ ਤ೧ औѱ ࢎਊؼ ࣻ ੓਺.
   1 ѱ֧ द؀ী ࢤޛ੿ࠁ೟ োҳ੄ ೙ਃࢿ ؀ف
   

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3. Ka-Kyung Kim
   PyCon.KR 2014 Lightning Talk
   ● ೙ਃࢿ: ؘ੉ఠ ࠙ࢳ੄ ಿ૕ਸ ബਯ੸ਵ۽ ઁযೞҊ, ҕز ੘সਸ ਊ੉ೞѱ ೞ
   ݴ, য۰਍ җઁ ѐߊ ೐۽Ӓ۔ ߂ ౵੉೐ۄੋਸ ੢ӝ੸ਵ۽ ਬ૑. ੘زਸ ੜ ೞ
   Ҋ, ੍ӝ ए਋ݴ పझ౟ ೞӝ ए਍ ೐۽Ӓې߁ ߑߨ੉ ೙ਃೣ.
   ● ੢੼: ী۞о ૑ࣘ੸ਵ۽ ߊѼغҊ ࣻ੿ؼ ࣻ ੓ਵݴ, प೷पীࢲ Ѩૐਸ ਊ੉ೞ
   ب۾ ೣ.
   ● IPython: Python, shell ݺ۸য, Rਸ ૑ਗೞݴ, ࢲ۽ ׮ܲ ೐۽Ӓ۔җ ೒ۖಬ
   ਸ ా೤ೞҊ ࠂ੟ೠ ࠙ࢳਸ ୊਺ࠗఠ ՘ө૑ ࣻ೯ೞѱ ೞח ജ҃ਸ ਤೠ ࢚ഐ੸
   ஹೊ౴ ജ҃
   2 ੤അ оמೠ ࢤޛ ੿ࠁ೟ بҳ
   

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4. Ka-Kyung Kim
   PyCon.KR 2014 Lightning Talk
   ● 2011֙ Fernando Perzо IPython ೐۽ં౟ܳ द੘ೣ.
   ● ؀ചഋ ஹೊ౴җ ࣗ೐౟ਝয ѐߊਸ ਤ೧ ୭੸੄ ࢤ࢑ࢿਸ ঳ب۾ ࢸ҅غ঻ਵݴ ୭Ӕ੄ җ೟҅࢑ਊ
   ౵੉ॆ ೐۽Ӓ۔ ઺ীࢲب ݒ਋ ઺ਃೠ بҳ.
   ● 'ಞ૘-ஹ౵ੌ-प೯' ߑधࠁ׮ 'प೯-ఐ࢝' ߑधਸ ੢۰ೣ. ؘ੉ఠ ఐ࢝, प೷, য়ܨ ౸ة, ߈ࠂ, ౵ۄ޷
   ఠ ୭੸ച ١ਸ ࡅܰѱ ୊ܻೡ ࣻ ੓਺.
   ● ਍৔୓ઁ੄ ऌ, ౵ੌ दझమҗب ੜ ా೤غয ੓ਵݴ, ׮ܲ ೐۽Ӓې߁ ঱যܳ ࢲನ౴ ೣ (rmagic
   plugin, RPy2 library).
   ● IPython notebook਷ ੹੗ ֢౟࠘җ ೐۽Ӓې߁ ജ҃ਸ ా೤ೞৈ, п ױ҅ীࢲ Ѿҗܳ ࠁҊ दпച
   ೞҊ ੷੢ ೡ ࣻ ੓ਵݴ, ֢౟৬ ௏ݭ౟ܳ ࢚ഐ੸ਵ۽ ୎о оמೞݴ ௿ܼ ೞա۽ ੹୓ ౵੉೐ۄੋਸ
   प೯ೡ ࣻ ੓਺.
   ● ٮۄࢲ ࢤޛ੿ࠁ ࠙ࢳ੄ ࢤ࢑ࢿਸ ೱ࢚दఃҊ ੤അࢿਸ ذח׮.
   !
   ● See details at http://nbviewer.ipython.org/gist/irobii/014b8aa3574090a0d04a
   3 IPython notebook
   

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5. Ka-Kyung Kim
   PyCon.KR 2014 Lightning Talk
   ● Pythonਸ ੉ਊೠ ࢤޛ੿ࠁ೟ झఠ٣!
   o Python Korea ૑ਗ!
   o ҳࢿਗ: BT, IT, Designer, बܻ೟੗, Ҵޙ೟੗
   (ରܳ ইח੗৬ ਍੹ೞח ੗৬੄ ݅թ)
   o ੗ܐ: http://biopy.github.io http://
   www.biopython.net
   !
   ● ߄੉য়झ೘ ழޭפ౭ ୹ߧ!
   o ߄੉য় + ֱҗ೟ী ҙब੉ ੓ח, पणഋ झఠ٣
   ழޭפ౭!
   o ழޭפ౭: https://www.facebook.com/
   groups/biospin/
   o ಕ੉૑: https://www.facebook.com/
   biospintalk
   4 BioPython study
   

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6. Ka-Kyung Kim
   PyCon.KR 2014 Lightning Talk
   ● Cumulative histogram: ݃੉௼۽ RNA੄ ఋѶ ࢎ੉౟ ਬഋী ٮܲ mRNA ߊഅ ಁ
   ఢਸ Kolmogorov–Smirnov (KS) పझ౟৬ ־੸ ࠺ਯ۽ بधച ೠ ৘!
   ● ҳഅ: http://nbviewer.ipython.org/gist/irobii/8e96a4834dc6993a25e2
   !
   ● ߑߨ: Ipython notebookীࢲ दпചܳ ਤ೧ matplot library৬ җ೟ ো࢑੉ оמ
   ೠ scipy੄ ks_2samp ӝמਸ ࢎਊ
   !
   ● Ѿۿ: ӝઓ੄ ুࣄীࢲ੄ ੘সਸ ੗زച ೡ ࣻ ੓঻ਵݴ, IPython notebook ղীࢲ
   Ѿҗ чਸ ഛੋೞҊ दпചо оמೣ.
   5 ࢚ഐ੸, ੤അ оמೠ ࢤޛ ੿ࠁ োҳ੄ ৘
   

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7. Ka-Kyung Kim
   хࢎ೤פ׮
   email: kakyung.kim@gmail.com
   

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