PyCon.KR Lightning Talk IPython으로 상호적, 재현 가능한 생물정보학 연구하기
Ka-Kyung KimIPythonਵ۽ ࢚ഐ, അ оמೠ!ࢤޛࠁ োҳೞӝ2014.08.30ӣо҃
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Ka-Kyung KimPyCon.KR 2014 Lightning Talk● 1960 ֙: ҅ ࢤޛ فؼ ޖ۵ ؘఠ ࣁח ওਵݴ, ױߔ ࢲৌ ࣻসਸా೧ Dayho بхਵ۽ ੋࣧػ റ റ CD-ROMী ߓನغ.● 1990 ֙: ࢤޛࠁبٜ ৈ۞ ৬ ࣁӐ ѱ֧ਸ ನೣ ؊ ؘఠ ࣁܳ࠙ࢳೞח झۨ٘ द ۽Ӓ۔җ җੋ ࣗਝয ಁఃܳ ࢎਊ ೣ.● 2003 ֙: ੋр ѱ֧ ৡۄੋ ҕѐ৬ ೣԋ ѱ֧ दо ઙܐؽ. Ҵ Ҵ݀ ࠁѤਗ(NIH) द௫य ҙ۲ ࢤޛী ਵ۽ ైೞৈ ࢳী بਸ ષ.● 2000 ֙ ߈ : Sanger द௫य ࡅܰҊ ۴ೠ ରࣁ द௫य ӝࣿী ೧ غযࣻୌীࢲ ѱ֧ ࠁܳ ݻ दрীࢲ ࣻੌਸ ా೧ оמೞѱ ೣ. ࢤػ ࠻ ؘఠী೧ࢲ زച ߂ ഛࢿ ਊೠ ҅ بҳܳ ѐߊ.● ې: 1,000׳۞ ѱ֧ दо о১ী ٮۄ, ѐੋ ѱ֧ী ೧ ҕҕ ؘఠ߬झо ߧۈೡ Ѫݴ, নೠ بҳ৬ ೣԋ ࠙ࢳ ೡ ࣻח ೂࠗೠ ࠁ ࣗझܳ ઁҕ ೡ Ѫ. ژೠ, ױߔ, ࢎ, ܐ , ജ҃ ઑѤ ؘఠ ాਸ ਤ೧ औѱ ࢎਊؼ ࣻ .1 ѱ֧ दী ࢤޛࠁ োҳ ਃࢿ ف
Ka-Kyung KimPyCon.KR 2014 Lightning Talk● ਃࢿ: ؘఠ ࠙ࢳ ಿਸ ബਯਵ۽ ઁযೞҊ, ҕز সਸ ਊೞѱ ೞݴ, য۰ җઁ ѐߊ ۽Ӓ۔ ߂ ۄੋਸ ӝਵ۽ ਬ. زਸ ੜ ೞҊ, ੍ӝ एݴ పझ ೞӝ ए ۽Ӓې߁ ߑߨ ਃೣ.● : ী۞о ࣘਵ۽ ߊѼغҊ ࣻؼ ࣻ ਵݴ, पपীࢲ Ѩૐਸ ਊೞب۾ ೣ.● IPython: Python, shell ݺ۸য, Rਸ ਗೞݴ, ࢲ۽ ܲ ۽Ӓ۔җ ۖಬਸ ాೞҊ ࠂೠ ࠙ࢳਸ ࠗఠ ө ࣻ೯ೞѱ ೞח ജ҃ਸ ਤೠ ࢚ഐஹೊ ജ҃2 അ оמೠ ࢤޛ ࠁ بҳ
Ka-Kyung KimPyCon.KR 2014 Lightning Talk● 2011֙ Fernando Perzо IPython ۽ંܳ दೣ.● ചഋ ஹೊҗ ࣗਝয ѐߊਸ ਤ೧ ୭ ࢤࢿਸ ب۾ ࢸ҅غਵݴ ୭Ӕ җ҅ਊॆ ۽Ӓ۔ ীࢲب ݒ ਃೠ بҳ.● 'ಞ-ஹੌ-प೯' ߑधࠁ 'प೯-ఐ࢝' ߑधਸ ۰ೣ. ؘఠ ఐ࢝, प, য়ܨ ౸ة, ߈ࠂ, ۄఠ ୭ച ١ਸ ࡅܰѱ ܻೡ ࣻ .● ઁ ऌ, ੌ दझమҗب ੜ ాغয ਵݴ, ܲ ۽Ӓې߁ যܳ ࢲನ ೣ (rmagicplugin, RPy2 library).● IPython notebook ֢࠘җ ۽Ӓې߁ ജ҃ਸ ాೞৈ, п ױ҅ীࢲ Ѿҗܳ ࠁҊ दпചೞҊ ೡ ࣻ ਵݴ, ֢৬ ݭܳ ࢚ഐਵ۽ о оמೞݴ ܼ ೞա۽ ۄੋਸप೯ೡ ࣻ .● ٮۄࢲ ࢤޛࠁ ࠙ࢳ ࢤࢿਸ ೱ࢚दఃҊ അࢿਸ ذח.!● See details at http://nbviewer.ipython.org/gist/irobii/014b8aa3574090a0d04a3 IPython notebook
Ka-Kyung KimPyCon.KR 2014 Lightning Talk● Pythonਸ ਊೠ ࢤޛࠁ झఠ٣!o Python Korea ਗ!o ҳࢿਗ: BT, IT, Designer, बܻ, Ҵޙ(ରܳ ইח৬ ೞח ৬ ݅թ)o ܐ: http://biopy.github.io http://www.biopython.net!● ߄য়झ ழޭפ౭ ߧ!o ߄য় + ֱҗী ҙब ח, पणഋ झఠ٣ழޭפ౭!o ழޭפ౭: https://www.facebook.com/groups/biospin/o ಕ: https://www.facebook.com/biospintalk4 BioPython study
Ka-Kyung KimPyCon.KR 2014 Lightning Talk● Cumulative histogram: ݃۽ RNA ఋѶ ࢎ ਬഋী ٮܲ mRNA ߊഅ ಁఢਸ Kolmogorov–Smirnov (KS) పझ৬ ־ ࠺ਯ۽ بधച ೠ !● ҳഅ: http://nbviewer.ipython.org/gist/irobii/8e96a4834dc6993a25e2!● ߑߨ: Ipython notebookীࢲ दпചܳ ਤ೧ matplot library৬ җ ো оמೠ scipy ks_2samp ӝמਸ ࢎਊ!● Ѿۿ: ӝઓ ুࣄীࢲ সਸ زച ೡ ࣻ ਵݴ, IPython notebook ղীࢲѾҗ чਸ ഛੋೞҊ दпചо оמೣ.5 ࢚ഐ, അ оמೠ ࢤޛ ࠁ োҳ
Ka-Kyung Kimхࢎפemail: [email protected]