Speeding up Genome Assembly with Sparse and Hierarchical Minimizer Indices

5633e4eaa009d960042a8f32b55b3d7f?s=47 Jason Chin
January 14, 2020

Speeding up Genome Assembly with Sparse and Hierarchical Minimizer Indices

I presented this slide deck in Plant and Animal Genomics Meeting (#PAG2020 #PAGXXVIII) 2020 in San Diego. We use a novel data structure to speed up genome assembly. It becomes possible to do large genome assemblies on a home computer. In the cloud or on a server, we will be able to assembly complicated genome like Cannabis in one to two hours.

5633e4eaa009d960042a8f32b55b3d7f?s=128

Jason Chin

January 14, 2020
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