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InteractOA – High-resolution references of ncRNA-mRNA interactions in Wikidata

InteractOA – High-resolution references of ncRNA-mRNA interactions in Wikidata

Given at WikiCite 2018 - Berkeley (November 27th , 2018)

Konrad Förstner

November 27, 2018
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  1. InteractOA –
    High-resolution references of ncRNA-mRNA
    interactions in Wikidata
    Konrad U. Förstner
    ZB MED – Information Center for Life Sciences, Cologne, Germany &
    TH Köln, Cologne Germany
    WikiCite 2018 – November 27th, 2018, Berkeley

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  2. Problems with scientific databases
    • missing sources of stored statements – if available
    only on the level of journal articles
    • maintainer (e.g. PhD student) leaves
    ⇒ db not maintained anymore

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  3. Solution: Wikidata

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  4. Use case – bacterial ncRNA-mRNA interactions
    https://en.wikipedia.org/wiki/RyeE_RNA – CC0

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  5. Use case – bacterial ncRNA-mRNA interactions
    ncRNA regulates





    → mRNA

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  6. Use case – bacterial ncRNA-mRNA interactions
    Can we refer to the exact sources (sentence, paragraph)
    of statements about ncRNA-mRNA interactions
    in Open Access articles from PubMedCentral?

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  7. Use case – bacterial ncRNA-mRNA interactions
    Yes, we can.
    https://tools.wmflabs.org/interactoa/

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  8. Hard work done by ...
    Muhammad Elhossary
    @muhammadhossary
    Q30045548

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  9. Future steps
    • Some polishing required
    • Text mining to find further interaction partners

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  10. What are your questions?
    https://tools.wmflabs.org/interactoa/
    konrad.foerstner.org / @konradfoerstner
    zbmed.de / @ZB_MED
    th-koeln.de / @th_koeln
    https://www.flickr.com/photos/nateone/3768979925/ – CC-BY by flick user nateone

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