InteractOA – High-resolution references of ncRNA-mRNA interactions in Wikidata

Transcript

1. InteractOA – High-resolution references of ncRNA-mRNA interactions in Wikidata Konrad

   U. Förstner ZB MED – Information Center for Life Sciences, Cologne, Germany & TH Köln, Cologne Germany WikiCite 2018 – November 27th, 2018, Berkeley

2. Problems with scientific databases • missing sources of stored statements

   – if available only on the level of journal articles • maintainer (e.g. PhD student) leaves ⇒ db not maintained anymore

3. Solution: Wikidata

4. Use case – bacterial ncRNA-mRNA interactions https://en.wikipedia.org/wiki/RyeE_RNA – CC0

5. Use case – bacterial ncRNA-mRNA interactions ncRNA regulates − −

   − − − → mRNA

6. Use case – bacterial ncRNA-mRNA interactions Can we refer to

   the exact sources (sentence, paragraph) of statements about ncRNA-mRNA interactions in Open Access articles from PubMedCentral?

7. Use case – bacterial ncRNA-mRNA interactions Yes, we can. https://tools.wmflabs.org/interactoa/

8. Hard work done by ... Muhammad Elhossary @muhammadhossary Q30045548

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14. Future steps • Some polishing required • Text mining to

    find further interaction partners

15. What are your questions? https://tools.wmflabs.org/interactoa/ konrad.foerstner.org / @konradfoerstner zbmed.de /

    @ZB_MED th-koeln.de / @th_koeln https://www.flickr.com/photos/nateone/3768979925/ – CC-BY by flick user nateone