Archive Forge - ORD Hackathon

Pitch of an ORD Hackathon 2021 project based on Challenge #5. This presentation was authored by Damien Jeannerat with contributions from myself and Giuseppe Peronato.

For details visit https://github.com/gperonato/archive-forge

Transcript

1. ORD Hackaton 2021
   5. Web-based platform to build
   FAIR structured archive files
   e
   e e e
   e
   e e e e
   e
   e
   e
   ZIP
   FAIR
   Damien Jeannerat
   Oleg Lavrovsky
   Giuseppe Peronato
   

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2. ORD Hackaton 2021
   Holiday souvenir
   Who was there
   +
   drop picture
   Name, Firstname
   Visits
   Place, museum, …
   Jeannerat, Damien
   localize on Map
   +
   Create zip file…
   drop document
   Accept, .png, .jpg
   create .png, in any case
   store as https://schema.org/person
   Sign in with ORCID
   Some input are optional others are mandatory
   If image, extract text (OCR)
   If .docx document, convert into .rtf
   When conditions are fulfilled…
   Store to Zenodo
   Allows to upload to …
   save as …
   Create Linked data
   

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3. ORD Hackaton 2021
   Structure determination by Nuclear Magnetic Resonnace
   Vanilin
   

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4. ORD Hackaton 2021
   Archive forge with linked data
   {spectrum
   {Instrument…}
   {Date}
   {Ref..
   {…}
   }
   },{
   }
   e
   (20)
   e
   {compound
   {Name…}
   {Formula}
   {INCHI…
   },{
   }
   Tools (.js or .py ?)
   to extract metadata for each type of file
   

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5. ORD Hackaton 2021
   Archive forge with linked data
   {spectrum
   {Instrument…}
   {Date}
   {Ref..
   {…}
   }
   },{
   }
   e
   (20)
   e
   {compound
   {Name…}
   {Formula}
   {INCHI…
   },{
   }
   {Assignment
   {Spectrum}
   {compound}
   {confidence}
   {Validation}
   e
   Combination of objects
   

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6. ORD Hackaton 2021
   Archive forge with linked data
   {spectrum
   {Instrument…}
   {Date}
   {Ref..
   {…}
   }
   },{
   }
   e
   (20)
   e
   {compound
   {Name…}
   {Formula}
   {INCHI…
   },{
   }
   {Assignment
   {Spectrum}
   {compound}
   {confidence}
   {Validation}
   e
   {Author
   {ORCID}
   {Institution}
   {ORCID}
   }
   {Reference
   {DOI}
   }
   

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7. ORD Hackaton 2021
   1) Front end (Oleg)
   2) Back end (Guiseppe)
   

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8. ORD Hackaton 2021
   1) Front end (Oleg)
   2) Back end (Guiseppe)
   -metadata
   -linked data
   -manifest file
   

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9. ORD Hackaton 2021
   https://github.com/gperonato/archive-forge
   

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10. ORD Hackaton 2021
    Conclusions
    Working (or about to work?)
    -Form, drop area, basic check
    -Ingestion (check file/folder content, format conversion)
    -Metadata data generation
    Future work
    -ZIP file generation
    -Linked data generation
    -Move from back to front end
    -Simplification for re-use in other fields
    -Upload (Zenodo, University repositories, Olos, …)
    -ORCHID login
    Requires more work
    -Rules for linked data, RO-create? (SWITCH?)
    Linked data
    inside
    

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