Data Citation Support in Reference Managers: Zotero as an Example

Presentation given at Force15 pre-conference workshop "Data Citation Support in Reference Managers" https://www.force11.org/meetings/force2015/pre-conference-meeting-list

Transcript

1. Data Citation Support in Reference Managers: Zotero as an Example Martin Fenner Technical Lead Article-Level Metrics Public Library of Science Open Metrics
2. • Policy • Training • Data Repositories • Data Citation • Indexing and Linking Moving from citable to cited
 Heather Piwowar 2 Data Citation Implementation
3. The genome of the bacterium responsible for the severe 2011 outbreak of hemolytic uremic syndrome in Germany
4. AFOB00000000
5. gb: AFOB00000000
6. <a id="__tag_362989289" class="tag_hotlink" ref="/protein/ AFOB00000000" href="/protein/ AFOB00000000">AFOB0000000</a> Markup in PubMed Central http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140518/
7. Escherichia coli O104:H4 str. LB226692, whole genome shotgun sequencing project. 2013 Nov 19 [cited 2015 Jan 11]; 
 Available from: http://www.ncbi.nlm.nih.gov/ nuccore/AFOB00000000.2 Citation using Vancouver Style
8. Who • authoring (the researcher) • curation (the publisher, data center, indexing service, …) How • discoverable • low barriers 8 Criteria for implementing 
 Data Citation
9. This Workshop • Endnote • Papers • Mendeley • CiteULike • Zotero 9 Data Citation needs Reference Manager Support
10. 10 Reference Manager Data Citation support is Many-to-Many Problem Thousands of data repositories and multiple reference managers Possible Solutions • central data citation index(es) • common framework for importing dataset metadata (similar to what Citation-Style Language has done for formatting citations)
11. 11 https://github.com/zotero/translators An open source framework for importing references from web pages
12. 12 https://github.com/zotero/translators/blob/master/NCBI%20Nucleotide.js Zotero NCBI Nucleotide Translator
13. 13 http://www.ncbi.nlm.nih.gov/nuccore/?term=Escherichia+coli+O104%3AH4 Extract references from search results
14. APA Style Escherichia coli O104:H4 str. LB226692, whole genome shotgun sequencing project. (2013). (Version 2). Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/ AFOB00000000.2 Pitfalls/Questions • dumbing down the metadata back into text • separate reference list section for data citations? • indexing services not picking up data citations 14 Problem solved once dataset is in the reference manager?
15. This presentation is made available under a CC-BY 4.0 license. http://creativecommons.org/licenses/by/4.0/