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Data Citation Support in Reference Managers: Zotero as an Example

Martin Fenner
January 11, 2015

Data Citation Support in Reference Managers: Zotero as an Example

Presentation given at Force15 pre-conference workshop "Data Citation Support in Reference Managers" https://www.force11.org/meetings/force2015/pre-conference-meeting-list

Martin Fenner

January 11, 2015
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  1. Data Citation Support in
    Reference Managers:
    Zotero as an Example
    Martin Fenner
    Technical Lead Article-Level Metrics
    Public Library of Science
    Open Metrics

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  2. • Policy
    • Training
    • Data Repositories
    • Data Citation
    • Indexing and Linking
    Moving from citable to cited

    Heather Piwowar
    2
    Data Citation Implementation

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  3. The genome of the bacterium
    responsible for the severe 2011
    outbreak of hemolytic uremic
    syndrome in Germany

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  4. AFOB00000000

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  5. gb: AFOB00000000

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  6. class="tag_hotlink" ref="/protein/
    AFOB00000000" href="/protein/
    AFOB00000000">AFOB0000000
    Markup in PubMed Central
    http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140518/

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  7. Escherichia coli O104:H4 str. LB226692, whole
    genome shotgun sequencing project. 2013 Nov
    19 [cited 2015 Jan 11]; 

    Available from: http://www.ncbi.nlm.nih.gov/
    nuccore/AFOB00000000.2
    Citation using Vancouver Style

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  8. Who
    • authoring (the researcher)
    • curation (the publisher, data center, indexing
    service, …)
    How
    • discoverable
    • low barriers
    8
    Criteria for implementing 

    Data Citation

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  9. This Workshop
    • Endnote
    • Papers
    • Mendeley
    • CiteULike
    • Zotero
    9
    Data Citation needs
    Reference Manager Support

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  10. 10
    Reference Manager Data Citation
    support is Many-to-Many Problem
    Thousands of data repositories and multiple reference
    managers
    Possible Solutions
    • central data citation index(es)
    • common framework for importing dataset metadata
    (similar to what Citation-Style Language has done for
    formatting citations)

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  11. 11
    https://github.com/zotero/translators
    An open source framework for
    importing references from web pages

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  12. 12
    https://github.com/zotero/translators/blob/master/NCBI%20Nucleotide.js
    Zotero NCBI Nucleotide
    Translator

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  13. 13
    http://www.ncbi.nlm.nih.gov/nuccore/?term=Escherichia+coli+O104%3AH4
    Extract references from
    search results

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  14. APA Style
    Escherichia coli O104:H4 str. LB226692, whole genome
    shotgun sequencing project. (2013). (Version 2).
    Retrieved from http://www.ncbi.nlm.nih.gov/nuccore/
    AFOB00000000.2
    Pitfalls/Questions
    • dumbing down the metadata back into text
    • separate reference list section for data citations?
    • indexing services not picking up data citations
    14
    Problem solved once dataset
    is in the reference manager?

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  15. This presentation is made available under a
    CC-BY 4.0 license.
    http://creativecommons.org/licenses/by/4.0/

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