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Standardizing biologging data for LifeWatch: Camera traps, acoustic telemetry and GPS tracking

6f6914b1cdb438695ec1aaabba7463bb?s=47 Peter Desmet
October 23, 2019

Standardizing biologging data for LifeWatch: Camera traps, acoustic telemetry and GPS tracking

Talk at Biodiversity Next in Leiden, Netherlands - October 23, 2019.

Abstract: https://doi.org/10.3897/biss.3.37413

6f6914b1cdb438695ec1aaabba7463bb?s=128

Peter Desmet

October 23, 2019
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  1. Standardizing biologging data for LifeWatch Camera traps, acoustic telemetry and

    GPS tracking Biodiversity Next, Leiden Peter Desmet
  2. Hi! •  Open data publication •  Research software development • 

    oscibio.inbo.be Peter Desmet, Stijn Van Hoey, Lien Reyserhove, Dimitri Brosens, Damiano Oldoni, Tanja Milotic (2019) doi.org/10.3897/biss.3.37413
  3. LifeWatch Flanders •  Part of: European LifeWatch infrastructure (ESFRI) • 

    Coordinated by: INBO & VLIZ •  Funded by: Research Foundation Flanders (FWO) •  Terrestrial, freshwater, and marine observatory lifewatch.be
  4. Bird tracking •  Operational: since 2013 •  Species: 4 – 

    Herring gull (55) –  Lesser black-backed gull (150) –  Marsh harrier (10) –  Oystercatcher (13) •  Detections: 18 million+ lifewatch.be/en/gps-tracking-network-large-birds
  5. Bird tracking •  Tags: UvA-BiTS.nl –  GPS, temperature, acceleration • 

    Read-out: wireless and automatic, via antenna near colony •  Data management: UvA-BiTS database, hosted by University of Amsterdam
  6. Bird tracking •  Open data publication: –  Initially: GBIF IPT

    –  Now: Movebank –  Hopefully: Movebank -> GBIF •  Data standardization: –  SQL views to Movebank format for reference, gps and acceleration data github.com/inbo/bird-tracking
  7. Fish tracking •  Operational: since 2014 •  Species: 16 – 

    European eel (401) –  Atlantic cod (151) –  Atlantic salmon (95) –  Other species (144) •  Detections: 17 million+ lifewatch.be/en/fish-acoustic-receiver-network
  8. Fish tracking •  Receivers: VEMCO –  160 permanent (PBARN) – 

    Temporary networks for studies •  Read-out: manual •  Data management: European Tracking Network (ETN) database hosted by VLIZ Reubens et al. doi.org/10.1186/s40317-019-0164-8
  9. Fish tracking •  Open data publication: –  GBIF IPT (data

    paper in preparation) •  Data standardization: –  SQL views to Darwin Core sampling-event format (OBIS ENV) github.com/inbo/etn-occurrences
  10. Camera traps •  Operational: since 2017 •  Target species: – 

    Wild boar –  Many bycatch species •  Detections: 37.5k triggered bursts lifewatch.be/en/camera-trap-research- infrastructure-catrein
  11. Camera traps •  Camera traps: Reconyx –  45 in national

    park –  15 elsewhere •  Read-out: manual •  Data management: Agouti, hosted by University of Wageningen www.agouti.eu
  12. Camera traps •  Open data publication: 2020 –  Zenodo: for

    CTMS and images –  GBIF IPT: for DwC occurrences, linking to images on Zenodo •  Data standardization: –  SQL views to Camera trap metadata standard (CTMS) –  EU ALTER-Net collaboration Forrester et al. doi.org/10.3897/BDJ.4.e10197
  13. Thank you! oscibio.inbo.be @oscibio Peter Desmet et al. (2019) Standardizing

    biologging data for LifeWatch: Camera traps, acoustic telemetry and GPS tracking. Presentation. http://bit.ly/lifewatch-biologging