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Standardizing biologging data for LifeWatch: Camera traps, acoustic telemetry and GPS tracking

Peter Desmet
October 23, 2019

Standardizing biologging data for LifeWatch: Camera traps, acoustic telemetry and GPS tracking

Talk at Biodiversity Next in Leiden, Netherlands - October 23, 2019.

Abstract: https://doi.org/10.3897/biss.3.37413

Peter Desmet

October 23, 2019
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  1. Standardizing
    biologging data
    for LifeWatch
    Camera traps,
    acoustic telemetry
    and GPS tracking
    Biodiversity Next, Leiden
    Peter Desmet

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  2. Hi!
    •  Open data publication
    •  Research software
    development
    •  oscibio.inbo.be
    Peter Desmet, Stijn Van Hoey, Lien Reyserhove,
    Dimitri Brosens, Damiano Oldoni, Tanja Milotic
    (2019) doi.org/10.3897/biss.3.37413

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  3. LifeWatch Flanders
    •  Part of: European LifeWatch
    infrastructure (ESFRI)
    •  Coordinated by: INBO & VLIZ
    •  Funded by: Research
    Foundation Flanders (FWO)
    •  Terrestrial, freshwater, and
    marine observatory
    lifewatch.be

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  4. Bird tracking
    •  Operational: since 2013
    •  Species: 4
    –  Herring gull (55)
    –  Lesser black-backed gull (150)
    –  Marsh harrier (10)
    –  Oystercatcher (13)
    •  Detections: 18 million+
    lifewatch.be/en/gps-tracking-network-large-birds

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  5. Bird tracking
    •  Tags: UvA-BiTS.nl
    –  GPS, temperature, acceleration
    •  Read-out: wireless and
    automatic, via antenna near
    colony
    •  Data management: UvA-BiTS
    database, hosted by University
    of Amsterdam

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  6. Bird tracking
    •  Open data publication:
    –  Initially: GBIF IPT
    –  Now: Movebank
    –  Hopefully: Movebank -> GBIF
    •  Data standardization:
    –  SQL views to Movebank format
    for reference, gps and
    acceleration data
    github.com/inbo/bird-tracking

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  7. Fish tracking
    •  Operational: since 2014
    •  Species: 16
    –  European eel (401)
    –  Atlantic cod (151)
    –  Atlantic salmon (95)
    –  Other species (144)
    •  Detections: 17 million+
    lifewatch.be/en/fish-acoustic-receiver-network

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  8. Fish tracking
    •  Receivers: VEMCO
    –  160 permanent (PBARN)
    –  Temporary networks for studies
    •  Read-out: manual
    •  Data management: European
    Tracking Network (ETN)
    database hosted by VLIZ
    Reubens et al. doi.org/10.1186/s40317-019-0164-8

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  9. Fish tracking
    •  Open data publication:
    –  GBIF IPT (data paper in
    preparation)
    •  Data standardization:
    –  SQL views to Darwin Core
    sampling-event format (OBIS
    ENV)
    github.com/inbo/etn-occurrences

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  10. Camera traps
    •  Operational: since 2017
    •  Target species:
    –  Wild boar
    –  Many bycatch species
    •  Detections: 37.5k triggered
    bursts
    lifewatch.be/en/camera-trap-research-
    infrastructure-catrein

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  11. Camera traps
    •  Camera traps: Reconyx
    –  45 in national park
    –  15 elsewhere
    •  Read-out: manual
    •  Data management: Agouti,
    hosted by University of
    Wageningen
    www.agouti.eu

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  12. Camera traps
    •  Open data publication: 2020
    –  Zenodo: for CTMS and images
    –  GBIF IPT: for DwC occurrences,
    linking to images on Zenodo
    •  Data standardization:
    –  SQL views to Camera trap
    metadata standard (CTMS)
    –  EU ALTER-Net collaboration
    Forrester et al. doi.org/10.3897/BDJ.4.e10197

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  13. Thank you!
    oscibio.inbo.be
    @oscibio
    Peter Desmet et al. (2019) Standardizing
    biologging data for LifeWatch: Camera traps,
    acoustic telemetry and GPS tracking.
    Presentation. http://bit.ly/lifewatch-biologging

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