Presented in the "New and Updated Bioinformatics Datasets, Tools and Resources" at the 28th International Conference on Arabidopsis Research (ICAR 2017) held in St. Louis, MO.
Presented on Thursday, June 22nd, 2017 by Vivek Krishnakumar
araport.org @araport Arabidopsis Information Portal www.Araport.org [email protected] co-PI Matt Vaughn co-PI Gos Micklem PI Chris Town co-PI Agnes Chan
araport.org @araport Data Integration Discovery and Analysis Data sharing and reuse Araport Scientific Community A One-Stop Data Platform Built for and by the Community
araport.org @araport ThaleMine – Gene List Analysis • Create a list of genes – For example, from gene expression profiling • Test for functional enrichments of: – Gene Ontology – Pathways – Publications – Protein Domains – Chromosome Locations Test for functional enrichments of gene lists
araport.org @araport Common Data Model Enables Crosstalk Between Resources ThaleMine PhytoMine SoyMine Peanut Mine Bean Mine Medic Mine Cowpea Mine Legume Federation JGI Araport Human Model Organisms Yeast …and more …and more • Orthology • Synteny
araport.org @araport JBrowse – Self-Service Prototype Seeding miRNA-Seq Seedling RNA-Seq reads Pollen RNA-Seq junctions Community Data Tracks Araport11 gene models Your genomic feature data will be displayed in the JBrowse menu and data tracks
araport.org @araport Araport Web Services Examples of APIs developed by the Araport team, and collaborators including BAR, CoGe, ATTED-II, PMR, HRGRN, SUBA, and iHub.
araport.org @araport Acknowledgements J Craig Venter Institute • Chris Town • Agnes Chan • Vivek Krishnakumar University of Cambridge • Gos Micklem • Sergio Contrino Former members • Jason Miller • Ben Rosen • Chia-Yi Cheng • Svetlana Karamycheva • Irina Belyaeva • Maria Kim • Seth Schobel • Eleanor Pence • Matthew Hanlon • Walter Moreira Texas Advanced Computing Center • Matt Vaughn • Steve Mock • Rion Dooley • Joe Stubbs • Josue Coronel • Erik Ferlanti TAIR/Phoenix • Eva Huala • Bob Muller