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Rcpp for everyone
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teuder
March 31, 2017
Technology
1
900
Rcpp for everyone
Brief introduction of learning resources for Rcpp.
teuder
March 31, 2017
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Transcript
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#include <Rcpp.h> using namespace Rcpp; %FpOJOHBGVODUJPO // [[Rcpp::export]] S4 asSparseMatrix(
DataFrame df ){ // prerequisite : // all the elements DataFrame is numeric/integer // and not containing NAs. // number of rows and columns int nrow = df.nrows(); int ncol = df.length();
6TJOHTUEWFDUPSJOTUFBEPG3DQQ7FDUPS #FDBVTFDIBOHJOHTJ[FPGWFDUPSBUSVOUJNF JTOPUFGpDJFOUJO3DQQ7FDUPS std::vector<R_xlen_t> rows; std::vector<R_xlen_t> cols; std::vector<double> vals;
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$POWFSUJOHTUEWFDUPSUP/VNFSJD7FDUPS S4 sm = sparseMatrix( Named("i") = wrap(rows), Named("j") = wrap(cols), Named("x") = wrap(vals), Named("dims") = NumericVector::create(nrow,ncol)); 4FUUJOHSPXOBNFTBOEDPMOBNFT List dimnames = List::create(R_NilValue, df.names()); sm.attr("Dimnames") = dimnames; 3FUVSOJOHUIFTQBSTFNBUSJY return sm; }
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9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 24 ষɹɹRcpp Rcpp RcppRͷؔΛC++Ͱ࣮Ͱ͖ΔύοέʔδͰ͢ɻRͱྨࣅͨ͠ελΠϧͰهड़Ͱ͖ ΔΑ͏ʹ࣮͞Ε͍ͯΔͨΊɺC++ʹਂ͍͕ࣝͳͯ͘ར༻͘͢͠ͳ͍ͬͯ·͢ɻ͠ ͔ɺͦͷͨΊͷ࣮ߦ٘ਜ਼ʹ͞Ε͍ͯͳ͍ͷͰɺ୭ͰϋΠύϑΥʔϚϯεͳ݁ՌΛ ಘΔ͜ͱ͕Ͱ͖·͢ɻ 24-1 Rcppͷ׆༻γʔϯ ࣍ͷΑ͏ͳέʔεC++Ͱ࣮͢Δ͜ͱʹΑΓɺRͱൺͯߴԽ͕ݟࠐΊ·͢ɻ ɾ ܁Γฦ͠ॲཧɺಛʹ࣍ͷॲཧ͕લͷॲཧʹґଘ͓ͯ͠ΓฒྻԽͰ͖ͳ͍ ɾ ϕΫ τϧߦྻͷݸʑͷཁૉΞΫηε͢Δඞཁ͕͋Δ ɾ ϕΫ τϧͷαΠζΛಈతʹมߋ͍ͨ͠ ɾ ߴͳσʔλߏΞϧΰϦζϜΛ༻͍ͨॲཧΛߦ͍͍ͨ RcppͷύϑΥʔϚϯεΛࣔͨ͢Ίɺ܁Γฦ͠ॲཧͷྫͱͯ͠MCMCΞϧΰϦζϜͷҰछͰ͋ ΔΪϒεαϯϓϥʔ ʢ1ʣ ͷ࣮ྫΛࣔ͠·͢ɻ͜ͷྫͰɺΪϒεαϯϓϥʔʹΑΓඪ४2ม ਖ਼ن͔ΒnαϯϓϦϯά͍ͯ͠·͢ɻ ·ͣൺֱͷͨΊRΛ༻͍࣮ͨྫΛࣔ͠·͢ ʢϦετ24.1ʣ ɻ Ϧε τ24.1ɹGibbs.R GibbsR <- function(b, n, t){ # 2มඪ४ਖ਼ن͔ΒnαϯϓϦ ϯά # b : 2มͷڞࢄ # n : αϯϓϧ # t : αϯϓϦ ϯάࣺͤͣͯΔִؒ X <- matrix(0, nrow = n, ncol = 2) x1 <- x2 <- 0 sd <- sqrt(1-b^2) for(i in 1:n){ for(j in 1:t){ x1 <- rnorm(1, b*x2, sd) x2 <- rnorm(1, b*x1, sd) ʢ1ʣ ߴ࣍ݩͷෳࡶͳ֬ʹै͏ཚΛੜ͢ΔϚϧίϑ࿈ϞϯςΧϧϩ๏ͱݺΕΔΞϧΰϦζϜͷҰछͰ͢ɻ 24-1 24 ষ ٕज़ධࣾɹ੫ࠐԁ