For whom the base calls

第三回NGS現場の会 アカデミックセッション ゆるふわ企画　夢と希望と現実と 「公共NGSデータベースの希望と現実 – 誰のために公開するのか」 Talk about how the public sequencing database should be.

Transcript

3. ޚྱ
5. ͓੠͕͚௖͍ͯ༗೉͏͍͟͝·͢
6. ຊ೔ͷηογϣϯ
10. ࣍ੈ୅γʔέϯε vs ެڞσʔλϕʔε
11. ʮ࣍ੈ୅γʔέϯεʯ
14. ʮެڞσʔλϕʔεʯ
15. http://www.ncbi.nlm.nih.gov/sra
16. http://www.nature.com/news/specials/bigdata/
22. ެڞσʔλϕʔεͷɺر๬ͱݱ࣮ɻ
24. ୭ͷͨΊʹɺσʔλΛެ։͢Δͷ͔ʔ
26. ఏɹڙ
27. ਓ͸ʮԿͷͨΊʹʯσʔλΛެ։͢Δͷ͔ʁ
28. http://www.plosone.org/static/publication#data%20report
29. (ग़ͤͱ)ɹݴΘΕΔ͔Βग़͢
30. ͜͜Ͱେձ௕ͷ͓ݴ༿Λ͓ฉ͖Լ͍͞ɻ
31. https://twitter.com/dritoshi/status/347159822870908928
32. ͍͟σʔλΛొ࿥ͯ͠Έ·͠ΐ͏
33. http://trace.ddbj.nig.ac.jp/tools/
34. ʁ
35. http://trace.ddbj.nig.ac.jp/images/submission/objects.jpg
36. ʁ
37. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
38. 
    ƅ㱼ƅ Pኯʄ
39. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
40. 
    
    ƅшƅ
41. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
42. 
    
    ƅшƅ
43. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
44. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
45. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
46. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
47. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/
48. 
    
    ƅшƅ
49. 
    ƅшƅ
50. ʲυΩϡϝϯτʳσʔλొ࿥͕େมա͗ͯେձ௕ౖ͕͓ΓͷΑ͏Ͱ͢ʲ௕͗͢ʳ
51. https://twitter.com/dritoshi/status/347155894875873280
52. https://twitter.com/dritoshi/status/347150290870493184
53. GEO: Gene Expression Omnibus AE: ArrayExpress
54. http://www.ncbi.nlm.nih.gov/geo/
55. ͍͟σʔλΛొ࿥ͯ͠Έ·͠ΐ͏(2)
56. http://www.ncbi.nlm.nih.gov/geo/info/seq.html
60. ͓લσʔλϕʔε԰΍ͬͯΜͩΖʂ twitter͹͔ͬΓͯ͠ͳ͍Ͱ࢓ࣄ͠Ζʂ
62. ଉͯ͠ͳ͍
63. http://www.ddbj.nig.ac.jp/insdc/icm2013-j.html
64. http://www.ddbj.nig.ac.jp/insdc/icm2013-j.html
65. ՝୊ͷղܾͱࠃࡍڠௐͷཱ྆
66. https://www.ncbi.nlm.nih.gov/Traces/sra/
68. ͍͢͝૿͑ͯΔ
69. (ͨͩͰ͑͞) DBͷߏஙҡ࣋؅ཧ͸ίετ͕ߴ͍
70. http://www.arabidopsis.org/doc/news/breaking_news/140#id45
71. SRA͔ͩͬͯͭͯҰ౓ࢮʹ͔͚ͨ
72. http://www.nlm.nih.gov/pubs/techbull/jf11/jf11_ncbi_reprint_sra.html
73. Ϣʔβ΋DB΋ɺΈΜͳṫࢮͰ͢
77. ΦʔϓϯαΠΤϯεͱ͍͏ཧ೦
78. ΦʔϓϯαΠΤϯεͱ͍͏ཧ૝
79. ΦʔϓϯαΠΤϯεͱ͍͏ໝ૝
80. ΦʔϓϯαΠΤϯεͱ͍͏ཧ೦ ΦʔϓϯαΠΤϯεͱ͍͏ཧ૝ ΦʔϓϯαΠΤϯεͱ͍͏ໝ૝
81. http://en.wikipedia.org/wiki/Open_science
82. http://blogs.nature.com/scientificdata/2013/07/04/research-data-hard-to-find-watch-our-short-video/
83. http://blogs.nature.com/scientificdata/2013/07/04/research-data-hard-to-find-watch-our-short-video/
85. ͦΕ͸ϙϦγʔͰ͋Γɺ৴೦Ͱ͋Δ
86. ͕ͩ৴೦Ͱϝγ͕৯͑Δͷ͔
87. (ͳ͠)
88. WE NEED ۀ੷
89. ࿦จ͕૿͑Ε͹ͦΕͰ͍͍ͷ͔
90. http://jp.techcrunch.com/2013/06/18/20130616sciencescape-wants-to-solve-academic-research-discoverability-deal-with-the-noise-problem/
91. http://sciencescape.org
93. ධՁͷج४ɺ࿦จ͕શͯ
94. http://en.wikipedia.org/wiki/Barack_Obama_%22Hope%22_poster
95. αΠΤϯε΁ͷߩݙ͸࿦จͷ਺Ͱ͔͠ଌΕͳ͍ͷ͔
96. http://www.nature.com/nmat/journal/v11/n11/full/nmat3485.html
97. ͍ΖΜͳج४͕͍͍͋ͬͯ
98. σʔλͷެ։͕ۀ੷ʹͳ͍͍ͬͯ
99. http://www.nature.com/scientificdata/
100. http://www.gigasciencejournal.com
101. ʮγʔέϯεΛ͠ͳ͍ʯͱ͍͏༐ؾ
102. (γʔέϯε͠ͳ͍ͱ͍͏NGS) ݱ৔͕ͦ͜ʹ͸͋Δ
103. ͍ΖΜͳج४͕͍͍͋ͬͯ
104. (ͳ͚Ε͹࡞Ε)
106. check it out on github.com/dbcls/jsbi2013/wiki or YOUR TIMELINE
107. ݚڀશൠͷࢥߟͱࢼߦͱࢦ޲ͷϓϩηε
108. ఆྔతʹධՁ͢Δ΋ͷ
111. https://twitter.com/gaou_ak/status/374444150176768000
112. ԿΛج४ʹͯ͠΋ήʔϜʹͳͬͯ͠·͏
113. αΠΤϯεͷਐาΛ༠ಋ͢ΔήʔϜΛઃܭͰ͖ͨਓ͕Ұ൪Ғ͍
114. ເͳΜͯͳ͍
116. ߨஊࣾίϛοΫε
     ਐܸͷڊਓ 
     ΑΓҾ༻
117. ݱ৔͔ͩΒͦ͜ߟ͑ͳͯ͘͸͍͚ͳ͍
118. ߨஊࣾίϛοΫε
     ਐܸͷڊਓ 
     ΑΓҾ༻
120. Έͳ͞ΜͳΒͰ͖Δ͸ͣ