For whom the base calls

For whom the base calls

第三回NGS現場の会 アカデミックセッション ゆるふわ企画 夢と希望と現実と 「公共NGSデータベースの希望と現実 – 誰のために公開するのか」 Talk about how the public sequencing database should be.

991f3366d9cc17386e6a66ef4abc6dbc?s=128

Tazro Inutano Ohta

September 05, 2013
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Transcript

  1. None
  2. None
  3. ޚྱ

  4. None
  5. ͓੠͕͚௖͍ͯ༗೉͏͍͟͝·͢

  6. ຊ೔ͷηογϣϯ

  7. None
  8. None
  9. None
  10. ࣍ੈ୅γʔέϯε vs ެڞσʔλϕʔε

  11. ʮ࣍ੈ୅γʔέϯεʯ

  12. None
  13. None
  14. ʮެڞσʔλϕʔεʯ

  15. http://www.ncbi.nlm.nih.gov/sra

  16. http://www.nature.com/news/specials/bigdata/

  17. None
  18. None
  19. None
  20. None
  21. None
  22. ެڞσʔλϕʔεͷɺر๬ͱݱ࣮ɻ

  23. None
  24. ୭ͷͨΊʹɺσʔλΛެ։͢Δͷ͔ʔ

  25. None
  26. ఏɹڙ

  27. ਓ͸ʮԿͷͨΊʹʯσʔλΛެ։͢Δͷ͔ʁ

  28. http://www.plosone.org/static/publication#data%20report

  29. (ग़ͤͱ)ɹݴΘΕΔ͔Βग़͢

  30. ͜͜Ͱେձ௕ͷ͓ݴ༿Λ͓ฉ͖Լ͍͞ɻ

  31. https://twitter.com/dritoshi/status/347159822870908928

  32. ͍͟σʔλΛొ࿥ͯ͠Έ·͠ΐ͏

  33. http://trace.ddbj.nig.ac.jp/tools/

  34. ʁ

  35. http://trace.ddbj.nig.ac.jp/images/submission/objects.jpg

  36. ʁ

  37. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  38. ƅ㱼ƅ Pኯʄ

  39. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  40. ƅшƅ

  41. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  42. ƅшƅ

  43. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  44. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  45. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  46. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  47. http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Quick_Sub_BK/

  48. ƅшƅ

  49. ƅшƅ

  50. ʲυΩϡϝϯτʳσʔλొ࿥͕େมա͗ͯେձ௕ౖ͕͓ΓͷΑ͏Ͱ͢ʲ௕͗͢ʳ

  51. https://twitter.com/dritoshi/status/347155894875873280

  52. https://twitter.com/dritoshi/status/347150290870493184

  53. GEO: Gene Expression Omnibus AE: ArrayExpress

  54. http://www.ncbi.nlm.nih.gov/geo/

  55. ͍͟σʔλΛొ࿥ͯ͠Έ·͠ΐ͏(2)

  56. http://www.ncbi.nlm.nih.gov/geo/info/seq.html

  57. None
  58. None
  59. None
  60. ͓લσʔλϕʔε԰΍ͬͯΜͩΖʂ twitter͹͔ͬΓͯ͠ͳ͍Ͱ࢓ࣄ͠Ζʂ

  61. None
  62. ଉͯ͠ͳ͍

  63. http://www.ddbj.nig.ac.jp/insdc/icm2013-j.html

  64. http://www.ddbj.nig.ac.jp/insdc/icm2013-j.html

  65. ՝୊ͷղܾͱࠃࡍڠௐͷཱ྆

  66. https://www.ncbi.nlm.nih.gov/Traces/sra/

  67. None
  68. ͍͢͝૿͑ͯΔ

  69. (ͨͩͰ͑͞) DBͷߏஙҡ࣋؅ཧ͸ίετ͕ߴ͍

  70. http://www.arabidopsis.org/doc/news/breaking_news/140#id45

  71. SRA͔ͩͬͯͭͯҰ౓ࢮʹ͔͚ͨ

  72. http://www.nlm.nih.gov/pubs/techbull/jf11/jf11_ncbi_reprint_sra.html

  73. Ϣʔβ΋DB΋ɺΈΜͳṫࢮͰ͢

  74. None
  75. None
  76. None
  77. ΦʔϓϯαΠΤϯεͱ͍͏ཧ೦

  78. ΦʔϓϯαΠΤϯεͱ͍͏ཧ૝

  79. ΦʔϓϯαΠΤϯεͱ͍͏ໝ૝

  80. ΦʔϓϯαΠΤϯεͱ͍͏ཧ೦ ΦʔϓϯαΠΤϯεͱ͍͏ཧ૝ ΦʔϓϯαΠΤϯεͱ͍͏ໝ૝

  81. http://en.wikipedia.org/wiki/Open_science

  82. http://blogs.nature.com/scientificdata/2013/07/04/research-data-hard-to-find-watch-our-short-video/

  83. http://blogs.nature.com/scientificdata/2013/07/04/research-data-hard-to-find-watch-our-short-video/

  84. None
  85. ͦΕ͸ϙϦγʔͰ͋Γɺ৴೦Ͱ͋Δ

  86. ͕ͩ৴೦Ͱϝγ͕৯͑Δͷ͔

  87. (ͳ͠)

  88. WE NEED ۀ੷

  89. ࿦จ͕૿͑Ε͹ͦΕͰ͍͍ͷ͔

  90. http://jp.techcrunch.com/2013/06/18/20130616sciencescape-wants-to-solve-academic-research-discoverability-deal-with-the-noise-problem/

  91. http://sciencescape.org

  92. None
  93. ධՁͷج४ɺ࿦จ͕શͯ

  94. http://en.wikipedia.org/wiki/Barack_Obama_%22Hope%22_poster

  95. αΠΤϯε΁ͷߩݙ͸࿦จͷ਺Ͱ͔͠ଌΕͳ͍ͷ͔

  96. http://www.nature.com/nmat/journal/v11/n11/full/nmat3485.html

  97. ͍ΖΜͳج४͕͍͍͋ͬͯ

  98. σʔλͷެ։͕ۀ੷ʹͳ͍͍ͬͯ

  99. http://www.nature.com/scientificdata/

  100. http://www.gigasciencejournal.com

  101. ʮγʔέϯεΛ͠ͳ͍ʯͱ͍͏༐ؾ

  102. (γʔέϯε͠ͳ͍ͱ͍͏NGS) ݱ৔͕ͦ͜ʹ͸͋Δ

  103. ͍ΖΜͳج४͕͍͍͋ͬͯ

  104. (ͳ͚Ε͹࡞Ε)

  105. None
  106. check it out on github.com/dbcls/jsbi2013/wiki or YOUR TIMELINE

  107. ݚڀશൠͷࢥߟͱࢼߦͱࢦ޲ͷϓϩηε

  108. ఆྔతʹධՁ͢Δ΋ͷ

  109. None
  110. None
  111. https://twitter.com/gaou_ak/status/374444150176768000

  112. ԿΛج४ʹͯ͠΋ήʔϜʹͳͬͯ͠·͏

  113. αΠΤϯεͷਐาΛ༠ಋ͢ΔήʔϜΛઃܭͰ͖ͨਓ͕Ұ൪Ғ͍

  114. ເͳΜͯͳ͍

  115. None
  116. ߨஊࣾίϛοΫεਐܸͷڊਓ  ΑΓҾ༻

  117. ݱ৔͔ͩΒͦ͜ߟ͑ͳͯ͘͸͍͚ͳ͍

  118. ߨஊࣾίϛοΫεਐܸͷڊਓ  ΑΓҾ༻

  119. None
  120. Έͳ͞ΜͳΒͰ͖Δ͸ͣ

  121. None